Table 4 Overlap of identified target PSMs by PeptideProphet, Percolator and CRanker.
From: An adaptive classification model for peptide identification
| Â | PSMs shared between Peptide-Prophet and CRanker | % Peptide- Prophet shared by CRanker | PSMs shared between Percolator and CRanker | % Percolator shared by CRanker | PSMs shared between Percolator and Peptide- Prophet | % Percolator shared by Peptide- Prophet |
|---|---|---|---|---|---|---|
ups1 | 497 | 87.8 | 390 | 89.0 | 404 | 92.2 |
yeast | 1402 | 97.2 | 1289 | 92.5 | 1272 | 92.5 |
tal08 | 15362 | 98.2 | 13521 | 94.1 | 13474 | 93.8 |
orbit-mips | 32264 | 97.1 | 31017 | 93.2 | 30704 | 93.3 |
orbit-nomips | 34691 | 97.3 | 32788 | 90.8 | 32777 | 90.8 |
velos-mips | 118540 | 98.0 | 112456 | 91.8 | 111801 | 91.2 |
velos-nomips | 171228 | 97.4 | 165140 | 95.0 | 164470 | 94.6 |