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Table 8 Comparisons of the number of predicted shared transcripts that are 80% full length transcripts in the test on mouse against human.

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

10−7

mouse

human

10−20

mouse

human

k_c

Oases

Mutual

Oases

Mutual

k_c

Oases

Mutual

Oases

Mutual

25_3

1851

1808 (−43)

1529

1553 (+24)

25_3

1733

1686 (−47)

1450

1477 (+27)

25_5

1716

1666 (−50)

1534

1536 (+2)

25_5

1605

1552 (−53)

1454

1459 (+5)

25_10

1250

1241 (−9)

1178

1183 (+5)

25_10

1124

1112 (−12)

1114

1126 (+12)

31_3

1085

1099 (+14)

739

746 (+7)

31_3

995

1008 (+13)

686

700 (+14)

31_5

1009

1018 (+9)

734

736 (+2)

31_5

923

932 (+9)

678

683 (+5)

31_10

720

723 (+3)

627

628 (+1)

31_10

654

656 (+2)

579

585 (+6)

  1. Notations are the same as in Table 7.