Fig. 1
From: A new Plasmodium vivax reference genome for South American isolates
Whole genome alignments of PvPAM and PvP01 (A) and PvPAM and PvW1 (B), and chromosomal alignments of the mitochondrial (C) and apicoplast (D) genome. Coloured blocks indicate homologous regions, and their height indicates the level of similarity between both reference genomes. Blank regions indicate sequences that do not align between the two reference genomes. Chromosomes are separated by a red vertical line and are numbered. If a telomeric repeat is present at the chromosomal end, this is indicated by a cross. Unassigned contigs are not shown. The mitochondrial and apicoplast genomes (C, D) align at different locations for the three different reference genomes, which is due to their circular nature. The mitochondrial and apicoplast chromosomes of PvW1 were reverse complemented to match the orientation of PvP01 and PvPAM. Alignments were made with the Mauve Contig Mover (MCM) algorithm (A, B) and the Progressive Mauve algorithm (C, D) [53], using the PlasmoDB PvP01 v51 and PvW1 v60 genome