Fig. 4
Selection signatures and biological annotation of the paired South China indigenous pigs and North China indigenous pigs. a-c Manhattan plots of the selection signatures detected by XP-EHH, FST, and EigenGWAS. d Significant selected loci distribution in the whole genome. e Chromatin state enrichment analysis for significant selected loci in 14 major tissues of pigs. f QTL region enrichment analysis for the selected region. g Enrichment analysis of complex traits based on the selected SNP windows in pigs. The whole trait name showed in table S6