Table 1 Sequencing statistics for all P. malariae isolates before and after SWGA
Sample name | Total number of reads sequenced | Reads aligned to P. malariae (PmUG01) reference (%) | Theoretical genome coverage (x) | Mean genome Coverage (x) | % callable (covered by > 10 reads) |
|---|---|---|---|---|---|
PM2 | 117,547,910 | 0.99 | 5.19 | 5.33 | 7.93 |
SWGA_PM2 | 70,850,874 | 78.10 | 246.92 | 251 | 92.61 |
PM3 | 112,932,632 | 2.19 | 11.05 | 11.3 | 52.03 |
SWGA_PM3 | 95,265,302 | 81.40 | 346.01 | 351 | 94.22 |
PM4 | 120,226,450 | 0.33 | 1.77 | 1.74 | 0.30 |
SWGA_PM4 | 62,588,970 | 74.91 | 209.20 | 210 | 90.34 |
PM5 | 2,093,960,196 | 0.03 | 3.41 | 11.3 | 2.24 |
SWGA_PM5 | 128,600,900 | 76.48 | 438.88 | 435 | 93.61 |
PM7 | 200,313,096 | 0.33 | 3.02 | 3.1 | 1.69 |
SWGA_PM7 | 105,277,814 | 73.74 | 346.38 | 350 | 93.15 |
PM8 | 62,918,160 | 3.01 | 8.46 | 8.6 | 29.89 |
SWGA_PM8 | 111,572,372 | 76.78 | 382.27 | 390 | 95.23 |