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Table 5 Identification of the additional high number of high-quality SNPs in P. ovale curtisi due to increasing genome coverage post-SWGA

From: Leveraging genomic insights from the neglected malaria parasites P. malariae and P. ovale using selective whole genome amplification (SWGA) approach

Sample name

SNPs

Common SNPs

Additional SNP identified with SWGA

POC1

15*

2

2628

SWGA_POC1

2630**

POC2

3386*

838

2548

SWGA_POC2

2556**

POC3

227*

119

15,591

SWGA_POC3

15,699**

POC4

7249*

4294

11,519

SWGA_POC4

15,813**

POC6

4685*

3407

49,704

SWGA_POC6

53,111**

POC7

14*

8

30,752

SWGA_POC7

30,760**

POC8

16*

8

19,285

SWGA_POC8

19,293**

  1. * SNP quality > 30 and depth > 10, ** SNP quality > 30 and depth > 30