Skip to main content

Table 6 Identification of the additional high number of high-quality SNPs in P. ovale wallikeri due to increasing genome coverage post-SWGA

From: Leveraging genomic insights from the neglected malaria parasites P. malariae and P. ovale using selective whole genome amplification (SWGA) approach

Sample name

SNPs

Common SNPs

Additional SNP identified with SWGA

POW1

1017*

556

31,969

SWGA_POW1

32,525**

POW2

310*

167

4795

SWGA_POW2

4962**

POW3

1130*

679

23,852

SWGA_POW3

24,531**

POW5

392*

181

53,564

SWGA_POW5

53,745**

POW6

4800*

2548

51,735

SWGA_POW6

54,283**

POW7

6842*

4133

47,111

SWGA_POW7

51,244**

POW8

1058*

608

53,255

SWGA_POW8

53,863**

  1. *SNP quality > 30 and depth > 10, ** SNP quality > 30 and depth > 30