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Table 7 Mapping rate and coverage of P. malariae PM7 after SWGA from a PacBio Sequel II long-read sequencing data

From: Leveraging genomic insights from the neglected malaria parasites P. malariae and P. ovale using selective whole genome amplification (SWGA) approach

 

Read Length

(kbp)

Raw Data

(Gbp)

Clean Data*

(Gbp)

Clean Rate (%)*

Sequencing Depth (X)*

SWGA PacBio

1–131

12.9

6.9

53.49

205.23

  1. *Clean Data are the raw PacBio sequencing data filtering out human sequence
  2. *Clean Rate (%) is calculated by (Clean Data/Raw Date) *100
  3. *Sequencing Depth is estimated by Clean Data/Reference genome size
  4. *The reference genome P. malariae UG01 (version: 2020-09-10, 33.62 Mb) is used in this study
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BMC Genomics

ISSN: 1471-2164

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