Skip to main content

Table 1 Summary of the RNA-Seq, de novo assembly, and RTV1 isolates data of bark samples from trees affected by TPD

From: Genomic diversity of Capillovirus uniheveae (Betaflexiviridae) infecting Hevea brasiliensis Muell. Arg. in Hainan, China

Sample name

Clean reads

Clean bases

Q30 (%)

GC (%)

Unigenes

RTV1 Unigenes

Longest RTV1 Unigenes

RTV1 isolates identified

DZBYCK

21,022,644

6.31G

92.33

43.09

27,629

0

  

DZXQ1

20,462,824

6.14G

92.17

42.5

29,427

2

6757

DZXQ1-1, DZXQ1-2, DZXQ1-3

DZXQ3

20,118,418

6.04G

92.48

44.92

26,137

2

6751

DZXQ3-1, DZXQ3-2, DZXQ3-3

DZXH

21,255,595

6.38G

92.39

42.2

31,694

1

6743

DZXH

DZXQ5

112,702,386

6.54G

93

41.13

28,117

3

6756

DZXQ5

DZXQ6

20,570,697

6.17G

92.46

42.66

29,528

2

6750

DZXQ6

DZXQ7-1

21,083,634

6.33G

92.82

42.13

31,115

2

6802

DZXQ7-1

DZXQ8-1

21,495,780

6.45G

93.06

43.01

32,177

3

652

DZXQ8-1

DZPY1

21,056,452

6.32G

93.09

43.53

35,112

2

6771

DZPY1-1, DZPY1-2, DZPY1-3

DZPY2

21,283,383

6.39G

92.5

42.76

32,979

1

6713

DZPY2

DZPL1

20,997,421

6.3G

92.55

42.68

39,979

4

4598

DZPL1

DZPL2

21,400,745

6.42G

91.97

42.79

30,941

1

373

DZPL2

DZHK

21,234,088

6.37G

91.63

41.87

30,422

1

440

DZHK

DZQN

21,492,493

6.45G

91.83

41.78

32,665

2

914

DZQN

DZCC

21,284,223

6.39G

92.31

42.23

33,371

1

6823

DZCC