Table 2 Nucleotide (amino acid) identity (%) between RTV1-QH and the new RTV1 isolates
Isolates | Accession No | Full genome | RdRp | MP | CP |
|---|---|---|---|---|---|
DZXQ1-1 | PP955903 | 82.93(85.81) | 83.72(92.41) | 90.40(74.10) | 90.34(98.60) |
DZXQ1-2 | PP955904 | 90.40(93.32) | 89.19(93.46) | 96.20(89.88) | 94.17(99.40) |
DZXQ1-3 | PP955905 | 81.30(84.52) | 74.70(84.52) | 89.00(73.71) | 90.18(97.82) |
DZXQ2 | PP955906 | 82.93(85.81) | 83.72(92.41) | 90.40(74.10) | 90.34(98.60) |
DZXQ3-1 | PP955907 | 82.80(86.08) | 83.28(92.08) | 89.80(72.29) | 90.18(99.07) |
DZXQ3-2 | PP955908 | 80.93(87.12) | 74.72(85.20) | 89.00(75.61) | 86.96(98.60) |
DZXQ3-3 | PP955909 | 82.83(85.83) | 76.85(86.85) | 90.80(78.52) | 90.18(96.72) |
DZXQ4 | PP955910 | 82.67(85.86) | 83.50(92.08) | 90.40(74.10) | 90.34(99.07) |
DZXQ5 | PP955911 | 82.81(85.95) | 83.72(92.41) | 90.40(74.10) | 90.03(99.53) |
DZXH | PP955912 | 82.71(85.81) | 83.50(92.08) | 90.60(74.70) | 90.49(99.07) |
DZXQ6 | PP955913 | 82.80(86.61) | 82.95(91.75) | 89.80(72.29) | 90.18(99.07) |
DZXQ7-1 | PP955914 | 82.71(86.26) | 83.17(91.75) | 90.60(74.70) | 90.49(99.07) |
DZXQ7-2 | PP955915 | 82.81(86.48) | 83.39(92.08) | 90.40(74.10) | 90.03(99.07) |
DZXQ8-1 | PP955916 | 82.67(86.34) | 83.17(91.75) | 90.40(74.10) | 90.34(99.07) |
DZXQ8-2 | PP955917 | 82.42(86.96) | 82.73(90.76) | 90.00(72.89) | 91.41(99.53) |
DZPY1-1 | PP955918 | 82.93(86.43) | 83.06(91.75) | 90.40(74.10) | 90.34(98.60) |
DZPY1-2 | PP955919 | 81.52(85.10) | 77.33(88.90) | 90.40(75.52) | 89.88(96.87) |
DZPY1-3 | PP955920 | 83.07(86.10) | 80.89(91.68) | 90.40(78.63) | 90.34(97.52) |
DZPY2 | PP955921 | 82.67(86.34) | 83.17(91.75) | 90.40(74.10) | 90.34(99.07) |
DZPL1 | PP955922 | 81.38(85.24) | 73.49(83.50) | 90.40(73.49) | 90.03(99.07) |
DZPL2 | PP955923 | 82.93(86.43) | 83.06(91.75) | 90.40(74.10) | 90.34(98.60) |
DZHK | PP955924 | 82.71(86.39) | 83.17(91.75) | 90.60(74.70) | 90.49(99.07) |
DZPM | PP955925 | 82.80(86.30) | 82.95(91.75) | 89.80(74.70) | 90.18(99.07) |
DZQN | PP955926 | 82.81(86.48) | 83.39(92.08) | 90.40(74.10) | 90.03(99.07) |
DZCC | PP955927 | 82.60(86.12) | 83.17(91.42) | 89.60(74.49) | 90.18(98.60) |
BSDL | PP955928 | 81.21(84.98) | 73.38(83.83) | 90.40(73.49) | 89.88(99.07) |
BSRB | PP955929 | 83.93(86.52) | 83.61(92.41) | 90.40(74.10) | 94.63(99.53) |
CJSLZ | PP955930 | 90.74(93.05) | 91.41(97.03) | 95.60(88.55) | 93.56(99.53) |
CJSYT | PP955931 | 82.71(85.81) | 83.72(92.08) | 90.60(74.70) | 90.18(99.07) |
CJWS | PP955932 | 89.29(94.05) | 88.89(97.36) | 96.00(90.36) | 94.48(98.60) |
CMFS | PP955933 | 95.38(97.58) | 98.02(98.02) | 99.00(97.59) | 90.18(99.07) |
CMJJ | PP955934 | 93.56(96.26) | 98.90(98.68) | 99.80(100.0) | 98.16(100.0) |
LGHS | PP955935 | 81.48(85.42) | 80.86(92.41) | 90.40(73.49) | 90.18(99.07) |
LGMZ | PP955936 | 83.50(83.36) | 80.86(92.41) | 90.80(75.30) | 88.34(99.07) |
LGRMFY | PP955937 | 90.52(93.44) | 90.98(96.70) | 96.80(92.17) | 93.40(99.53) |
QZCZ | PP955938 | 80.61(86.61) | 82.95(91.75) | 88.80(70.48) | 90.18(98.14) |
QZYG | PP955939 | 80.81(86.17) | 83.17(99.01) | 88.80(70.48) | 90.18(99.07) |
TCDY | PP955940 | 87.83(90.57) | 88.82(92.74) | 99.60(100.0) | 95.55(99.53) |
TCGM | PP955941 | 82.79(85.95) | 83.06(99.01) | 90.80(75.30) | 90.18(98.60) |
TCJM | PP955942 | 83.90(88.81) | 83.17(99.34) | 98.00(95.78) | 90.18(99.07) |
Average | Â | 83.99(87.46) | 83.44(92.27) | 91.67(78.22) | 90.93(98.87) |