Genomic analysis reveals population structure and selection signatures in plateau dairy cattle

BMC Genomics

Table 1 Sources of experimental animal and genetic data

Population	Region	Breed	Number	Chip type
Plateau dairy cattle
GH100	Lhasa, Tibet	Holstein cattle (94 ~ 100% Holstein bloodlines)	129	150 K SNP chip
GH85	Lhasa, Tibet	cows with 85% ~ 93% Holstein bloodlines	92	150 K SNP chip
GH75	Lhasa, Tibet	cows with 75% ~ 84% Holstein bloodlines	92	150 K SNP chip
GH40	Lhasa, Tibet	crossbred cattle (40% ~ 74% Holstein bloodlines)	119	150 K SNP chip
GJ	Lhasa, Tibet	Jersey cattle (76% ~ 100% Jersey bloodlines)	28	150 K SNP chip
Plains dairy cattle
PH	Beijing	purebred Holstein Cattle	57	150 K SNP chip
PJ	Dingzhou, Hebei	purebred Jersey cattle	77	150 K SNP chip
Plateau native cattle
XZ	Shigatse, Tibet	Tibet Cattle	61	100 K SNP chip
AP	Nyingchi, Tibet	Apaijiza Cattle	39	100 K SNP chip
TF	Shigatse, Tibet	Shigatse Hump Cattle	59	100 K SNP chip

ISSN: 1471-2164