Table 2 List of DEGs at the QTL regions

A11

Gh_A11G2836

RPPL1

Putative disease resistance RPP13-like protein 1

M120

8

2.02

Gh_A11G2856

XYL1

Alpha-xylosidase 1

M120

8

-1.17

Gh_A11G2865

IQM3

IQ domain-containing protein

M120

16

-1.92

D11

Gh_D11G3190

RGA4

Putative disease resistance protein

M120

8

1.63

Gh_D11G3231

XYL1

Alpha-xylosidase 1

M120

8

-1.68

Gh_D11G3245

na

na

M120

16

-2.17

Gh_D11G3247

IQM3

IQ domain-containing protein

M120

8

1.65

A02

Gh_A02G0134

na

na

M120

12

1.94

Gh_A02G0154

At1g14780

MACPF domain-containing protein

M120

8

1.32

Gh_A02G0165

CYS2

Cysteine proteinase inhibitor 2

M120

8

-1.88

M120

20

-2.24

Gh_A02G0172

CBDAS2

Cannabidiolic acid synthase-like 1

M120

8

4.41

M120

16

4.50

Gh_A02G0174

TMK4

Receptor-like kinase

M120

8

-1.30

Gh_A02G0178

SBP2

Selenium-binding protein 2

C201

16

2.67

M120

16

5.12

Gh_A02G0182

HSFA5

Heat stress transcription factor A-5

M120

8

1.07

Gh_A02G0219

na

Cytochrome P450 CYP749A22

M120

8

1.47

Gh_A02G0220

na

Cytochrome P450 CYP749A22

M120

8

1.17

Gh_A02G0242

na

Glutamine synthetase leaf isozyme, chloroplastic

M120

8

-1.72

C201

12

-1.67

Gh_A02G0276

na

Endo-1,3

M120

8

1.05

D02

Gh_D02G0169

na

na

M120

12

1.09

Gh_D02G0191

At1g14780

MACPF domain-containing protein

M120

8

1.34

Gh_D02G0196

WAKL8

Wall-associated receptor kinase-like 8

M120

16

7.25

M120

20

-7.51

Gh_D02G0205

BHLH62

Transcription factor

C201

20

-1.18

Gh_D02G0206

CYS2

Cysteine proteinase inhibitor 2

M120

20

-3.64

Gh_D02G0213

na

Tetrahydrocannabinolic acid synthase

C201

16

2.08

Gh_D02G0216

CBDAS2

Cannabidiolic acid synthase-like 1

M120

8

2.93

Gh_D02G0218

na

na

C201

16

6.22

Gh_D02G0220

na

Xyloglucan endotransglucosylase/hydrolase 2

C201

20

-1.61

M120

20

-2.26

Gh_D02G0241

SBP2

Selenium-binding protein 2

M120

16

2.33

Gh_D02G0242

SBP2

Selenium-binding protein 2

M120

16

6.34

M120

20

4.62

Gh_D02G0257

RLP12

Receptor-like protein 12

C201

16

3.53

Gh_D02G0259

RLP12

Receptor-like protein 12

M120

8

1.95

M120

12

1.62

M120

16

2.10

Gh_D02G0289

na

Cytochrome P450 CYP749A22

M120

8

1.21

Gh_D02G0291

APL

Myb family transcription factor

M120

8

1.34

Gh_D02G0311

na

Glutamine synthetase leaf isozyme, chloroplastic

M120

8

-1.68

Gh_D02G0328

GSTU7

Glutathione S-transferase U7

M120

8

2.01

Gh_D02G0326

GSTU7

Glutathione S-transferase U7

M120

20

2.69

Gh_D02G0327

na

na

M120

20

9.27

Gh_D02G0329

na

Probable glutathione S-transferase

C201

16

-1.41