Table 4 List of gene sets enriched for both cow conception rate at first service (CCR1) and the number of breeding services required for conception (TBRD)
Functional Category | Gene seta | NES b | |
CCR1 | TBRD | ||
Cellular Component Organization | Actin cytoskeleton organization (GO:0030036) | 3.055 | 3.32 |
Actin filament based process (GO:0030029) | 3.101 | 3.245 | |
Cellular component assembly (GO:0022607) | 3.34 | 4.08 | |
Cellular component biogenesis (GO:0044085) | 3.261 | 3.626 | |
Cellular localization (GO:0051641) | 3.765 | 3.083 | |
Cellular macromolecular complex assembly (GO:0065003) | 4.055 | 3.434 | |
Cellular macromolecule localization (GO:0070727) | 3.031 | 3.146 | |
Cellular protein complex assembly (GO:0065003) | 3.932 | 3.35 | |
Cytoskeleton organization (GO:0007010) | 3.331 | 3.183 | |
Gap junction (K - hsa04540) | 3.966 | 3.5 | |
Macromolecular complex assembly (GO:0065003) | 4.472 | 3.967 | |
Macromolecular complex binding (GO:0044877) | 4.131 | 3.348 | |
Macromolecular complex subunit organization (GO:0043933) | 3.261 | 3.785 | |
Macromolecule localization (GO:0033036) | 3.051 | 3.057 | |
Organelle localization (GO:0051640) | 3.509 | 3.15 | |
Protein complex assembly (GO:0065003) | 4.384 | 3.633 | |
Protein complex biogenesis (GO:0070271) | 4.234 | 3.488 | |
Mitotic Cell Cycle | Cell cycle (R-HSA-1640170) | 4.869 | 3.414 |
Cell Cycle, Mitotic (R-HSA-69278) | 5.077 | 3.831 | |
Cell division (GO:0051301) | 3.092 | 3.649 | |
Loss of NLP from mitotic centrosomes (R-HSA-380259) | 4.676 | 4.293 | |
Mitotic G2-G2/M phases (R-HSA-453274) | 4.744 | 3.523 | |
Recruitment of mitotic centrosome proteins and complexes (R-HSA-380270) | 4.769 | 4.327 | |
RNA & mRNA Metabolic Processes | Regulation of mRNA metabolic process (GO:1903311) | 3.423 | 3.318 |
Regulation of mRNA processing (GO:0050684) | 3.411 | 3.222 | |
Regulation of RNA splicing (GO:0043484) | 4.311 | 4.062 | |
Signaling Pathways | Neurotrophin signaling pathway (K - hsa04722) | 3.749 | 3.293 |
Notch signaling pathway (P00045) | 3.139 | 3.629 | |
Signaling by NGF (R-HSA-187037) | 4.423 | 3.208 | |
Other | Cilium morphogenesis (GO:0060271) | 4.236 | 3.237 |
Positive regulation of lipid biosynthetic process (GO:0046889) | 3.281 | 3.112 | |
Protein polymerization (GO:0051258) | 4.806 | 3.422 | |
Retinol metabolism (K - map00830) | 3.503 | 3.537 | |
Transmembrane transport of small molecules (R-HSA-382551) | 3.43 | 3.23 | |