Table 3 List of SNPs identified in the QTL region on chromosome A01 and their significance
Position | Ref | Alt | Gene ID | Genomic region | Gene description | S1 | S17 | Amino acid change | SNP effect |
|---|---|---|---|---|---|---|---|---|---|
12,060,020 | T | C | - | Intergenic | - | C | T | ||
12,064,257 | T | C | 1PK53M | Intronic | Disease resistance protein (TIR-NBS-LRR class) | T | C | ||
12,064,414 | G | A | 1PK53M | Intronic | Disease resistance protein (TIR-NBS-LRR class) | G | A | ||
12,205,766 | G | A | - | Intergenic | - | A | G | ||
12,309,043 | T | C | VKPB3K | Exonic | Putative nuclease HARBI1-like | C | T | T14A | Non-synonymous |