Table 1 Overview and characteristics of an updated SmVAL family
Name | Chromosome | Gene ID | Transcript ID | Gene start (bp) | Gene end (bp) | Gene length | Protein length | SP/TM (Phobius) | Group |
|---|---|---|---|---|---|---|---|---|---|
Previously identified SmVALs | |||||||||
SmVAL1 | 6 | Smp_193680 | Smp_193680.1 | 12,437,483 | 12,439,150 | 1667 | 234 | YES | 1 |
SmVAL2 | 6 | Smp_002630 | Smp_002630.1 | 12,468,974 | 12,470,914 | 1940 | 229 | YES | 1 |
SmVAL3 | 6 | Smp_316760 | Smp_316760.1 | 17,278,025 | 17,279,298 | 1273 | 178 | N/O | 1 |
SmVAL4 | 6 | Smp_002070 | Smp_002070.1 | 4,187,554 | 4,193,626 | 6072 | 181 | YES | 1 |
SmVAL5 | 6 | Smp_336880 | Smp_336880.1 | 17,331,374 | 17,335,886 | 4512 | 184 | YES | 1 |
SmVAL6.1 | 1 | Smp_124050 | Smp_124050.1 | 11,722,354 | 11,790,303 | 67,949 | 429 | N/O | 2 |
SmVAL6.2 | 1 | Smp_124050 | Smp_124050.2 | 11,722,354 | 11,790,303 | 67,949 | 423 | N/O | 2 |
SmVAL6.3 | 1 | Smp_124050 | Smp_124050.3 | 11,722,354 | 11,790,303 | 67,949 | 414 | N/O | 2 |
SmVAL7 | 6 | Smp_300070 | Smp_300070.1 | 17,323,751 | 17,327,231 | 3480 | 193 | TM | 1 |
SmVAL8 | 6 | Smp_123550 | Smp_123550.1 | 12,477,072 | 12,480,198 | 3126 | 249 | TM | 1 |
SmVAL9 | 6 | Smp_176180 | Smp_176180.1 | 16,367,696 | 16,373,800 | 6104 | 182 | YES | 1 |
SmVAL10 | 6 | Smp_002060 | Smp_002060.1 | 4,171,241 | 4,183,900 | 12,659 | 170 | YES | 1 |
SmVAL11.1 | 2 | Smp_012350 | Smp_012350.1 | 25,764,239 | 25,784,550 | 20,311 | 400 | N/O | 2 |
SmVAL11.2 | 2 | Smp_012350 | Smp_012350.1 | 25,764,239 | 25,784,550 | 20,311 | 423 | N/O | 2 |
SmVAL12 | 6 | Smp_123540 | Smp_123540.1 | 12,487,474 | 12,491,566 | 4092 | 204 | TM | 1 |
SmVAL13 | 1 | Smp_124060 | Smp_124060.1 | 11,676,364 | 11,702,352 | 25,988 | 236 | N/O | 2 |
SmVAL14 | 1 | Smp_078490 | Smp_078490.1 | 2,040,271 | 2,042,090 | 1819 | 219 | YES | 1 |
SmVAL15 | 6 | Smp_070250 | Smp_070250.1 | 17,308,316 | 17,312,821 | 4505 | 248 | YES | 1 |
SmVAL16 | 1 | Smp_124070 | Smp_124070.1 | 11,644,064 | 11,669,918 | 25,854 | 169 | N/O | 2 |
SmVAL17 | 1 | Smp_331830 | Smp_331830.1 | 19,494,075 | 19,508,994 | 14,919 | 157 | N/O | 2 |
SmVAL18 | 6 | Smp_001890 | Smp_001890.1 | 3,518,374 | 3,526,057 | 7683 | 194 | TM | 1 |
SmVAL19 | 6 | Smp_123090 | Smp_123090.1 | 3,503,241 | 3,510,772 | 7531 | 186 | YES | 1 |
SmVAL20 | 6 | Smp_127130 | Smp_127130.1 | 22,505,531 | 22,514,880 | 9349 | 225 | N/O | 1 |
SmVAL21 | 6 | Smp_159290 | Smp_159290.1 | 12,417,430 | 12,419,089 | 1659 | 234 | YES | 1 |
SmVAL22 | 4 | Smp_139450 | Smp_139450.1 | 2,688,513 | 2,690,855 | 2342 | 219 | YES | 1 |
SmVAL23 | 6 | Smp_160250 | Smp_160250.1 | 17,281,855 | 17,283,130 | 1275 | 182 | YES | 1 |
SmVAL24 | 6 | Smp_141550 | Smp_141550.1 | 17,213,661 | 17,215,006 | 1345 | 195 | YES | 1 |
SmVAL25 | 6 | Smp_141560 | Smp_141560.1 | 17,239,323 | 17,240,623 | 1300 | 195 | YES | 1 |
SmVAL26 | 6 | Smp_154260 | Smp_154260.1 | 16,413,349 | 16,416,075 | 2726 | 182 | YES | 1 |
SmVAL27 | 6 | Smp_154290 | Smp_154290.1 | 16,593,216 | 16,595,909 | 2693 | 182 | YES | 1 |
SmVAL28 | 6 | Smp_176160 | Smp_176160.1 | 16,378,302 | 16,381,034 | 2732 | 182 | YES | 1 |
SmVAL29 | 6 | Smp_120670 | Smp_120670.1 | 16,391,667 | 16,396,592 | 4925 | 153 | N/O | 1 |
Newly identified SmVALs | |||||||||
SmVAL30 | 6 | Smp_131370 | Smp_131370.1 | 21,769,518 | 21,776,061 | 6543 | 208 | N/O | 1 |
SmVAL31 | 1 | Smp_200460 | Smp_200460.1 | 4,030,097 | 4,049,167 | 19,070 | 197 | N/O | 2 |
SmVAL32 | 6 | Smp_300080 | Smp_300080.1 | 17,338,761 | 17,341,822 | 3061 | 193 | TM | 1 |
SmVAL33 | 6 | Smp_313710 | Smp_313710.1 | 17,299,341 | 17,300,791 | 1450 | 178 | N/O | 1 |
SmVAL34 | 6 | Smp_317520 | Smp_317520.1 | 17,237,013 | 17,238,811 | 1798 | 185 | YES | 1 |
SmVAL35 | 6 | Smp_347320 | Smp_347320.1 | 17,210,799 | 17,213,179 | 2380 | 185 | YES | 1 |