Table 2 Summary of statistics of annotated repeats in the genome of the Syrian hamster
A Sequence repeats in the genome of the Syrian hamster | ||||||
|---|---|---|---|---|---|---|
|  | Denovo + Repbase | TE proteins | Combined TEs | |||
| Â | Length(bp) | Percent of sequence (%) | Length(bp) | Percent of sequence (%) | Length(bp) | Percent of sequence(%) |
DNA | 6,525,330 | 0.25 | 90,746 | 0 | 6,603,284 | 0.26 |
LINE | 219,554,604 | 8.56 | 196,584,960 | 7.67 | 305,804,643 | 11.93 |
SINE | 16,653,125 | 0.65 | 0 | 0 | 16,653,125 | 0.65 |
LTR | 829,194,405 | 32.34 | 44,671,419 | 1.74 | 832,033,076 | 32.45 |
Simple_repeat | 792 | 0 | 0 | 0 | 792 | 0 |
Unknown | 25,350,712 | 0.99 | 0 | 0 | 25,350,712 | 0.99 |
Total | 1,044,958,128 | 40.75 | 241,312,878 | 9.41 | 1,052,652,418 | 41.05 |
B Repeat sequences in the genome of the Syrian hamster | ||||||
Type | Repeat Size(bp) | % of genome | ||||
Trf | 110,690,172 | 4.32 | ||||
Repeatmasker | 1,044,958,128 | 40.75 | ||||
Proteinmask | 241,312,878 | 9.41 | ||||
Total | 1,078,170,882 | 42.05 | ||||