Table 3 Summary of statistics of predicted protein-coding genes
Gene set | Total number of gene | Average transcript length(bp) | Average CDS length(bp) | Average exons per gene | Average exon length(bp) | Average intron length(bp) |
|---|---|---|---|---|---|---|
De novo | ||||||
 Augustus | 30,520 | 18,266.30 | 1,111.07 | 5.53 | 200.79 | 3,784.14 |
 GlimmerHMM | 383,542 | 5,555.94 | 427.93 | 2.73 | 156.64 | 2,960.91 |
 SNAP | 79,647 | 49,958.46 | 717.22 | 5.26 | 136.44 | 11,568.46 |
 Geneid | 40,070 | 29,193.85 | 991.51 | 5.27 | 188.1 | 6,603.06 |
 Genscan | 47,569 | 34,543.32 | 1,156.16 | 7 | 165.13 | 5,563.20 |
Homolog | ||||||
 Cgr | 37,537 | 13,070.07 | 1,142.64 | 5.17 | 220.99 | 2,859.99 |
 Hsa | 32,857 | 15,196.53 | 1,156.65 | 5.55 | 208.51 | 3,087.55 |
 Mca | 28,498 | 17,891.94 | 1,273.00 | 6.33 | 201.08 | 3,117.45 |
 Mmu | 28,128 | 18,200.02 | 1,298.26 | 6.43 | 201.95 | 3,113.36 |
 Moc | 28,394 | 18,066.77 | 1,282.80 | 6.39 | 200.62 | 3,111.46 |
 Pma | 27,570 | 18,297.88 | 1,361.89 | 6.58 | 206.83 | 3,032.59 |
 Rno | 36,489 | 14,692.09 | 1,238.03 | 5.42 | 228.22 | 3,040.73 |
RNAseq | ||||||
 PASA | 132,230 | 21,243.56 | 1,094.14 | 6.32 | 173.09 | 3,786.61 |
 Cufflinks | 106,114 | 31,794.03 | 3,604.75 | 7.44 | 484.53 | 4,377.43 |
 EVM | 37,268 | 17,477.57 | 1,023.02 | 5.46 | 187.24 | 3,686.28 |
 Pasa-update | 36,791 | 20,841.24 | 1,066.45 | 5.69 | 187.51 | 4,218.54 |
 Final set | 21,387 | 33,298.04 | 1,459.84 | 8.6 | 169.8 | 4,190.66 |