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Table 2 The average genome assembly metrics from sequencing projects including the sequences of 50 A. pullulans strains [63], 49 A. melanogenum strains [95], and 8 A. subglaciale strains [97]

From: Genome mining the black-yeast Aureobasidium pullulans NRRL 62031 for biotechnological traits

 

A. pullulans

A. melanogenum

A. subglaciale

Genome assembly size (Mb)

28.04 (Âħ 1.03)

41.43 (Âħ 10.25)

25.97 (Âħ 0.54)

Number of contigs (n)

1,629 (Âħ 1,523)

N/A

N/A

N50 length (bp)

74,165 (Âħ 88,815)

N/A

N/A

GC content (%)

50.65 (Âħ 0.14)

50.04 (Âħ 0.46)

50.66 (Âħ 0.08)

Gene number (n)

10,646 (Âħ 238)

18,745 (Âħ 6,405)

9,457 (Âħ 343)

Gene average length (bp)

1,564 (Âħ 50)

1,378 (Âħ 232)

1,607 (Âħ 16)

CDS total length (% of genome)

54.91 (Âħ 1.28)

53.18 (Âħ 2.47)

54.20 (Âħ 1.18)

CDS total length (Mbp)

15.40 (Âħ 0.66)

22.01 (Âħ 5.52)

14.08 (Âħ 0.38)

  1. CDS coding sequence, N/A not available, N50 the sequence length of the shortest contig at 50% of the total assembly length