Fig. 3
From: Large indel detection in region-based phased diploid assemblies from linked-reads
One example of 2.07kb heterozygous deletion from the stLFR linked-reads data by RegionIndel. A The IGV displays assembled diploid contigs from AquiaSV. It includes tracks for the contig BAM file from RegionIndel and the GiaB benchmark VCF file. The contigs also show that there are several variants in the nearby region. B It is a zoom-in view of the target SV in the center. The left inset box has the description of this benchmark SV, and the right inset box has the description of the contig information generated by RegionIndel. It indicates that this deletion is identified from the contig of haplotype1 and the length of this contig is 48.069kb. The gold standard supports this heterozygous deletion