Fig. 4
From: Large indel detection in region-based phased diploid assemblies from linked-reads
One example of 70bp homozygous insertion from the 10x linked-reads data by RegionIndel. A The IGV displays assembled diploid contigs from AquiaSV. It includes tracks for the contig BAM file from RegionIndel and the GiaB benchmark VCF file. The contigs also show there are several variants in the nearby region. B It is a zoom-in view of the target SV in the center. The left inset box has the description of this benchmark SV, and the right inset box has the description of the contig information generated by RegionIndel. The gold standard supports this homozygous insertion. The contigs indicate this 70bp insertion is identified by contigs from both haplotypes