Fig. 1

An example of the miRDeep2 output. The figure illustrated the output for the miRNA of novel_555. The upper part of Fig. 1 showed the read count and the total count of each part. The predicted secondary structure of the hairpin is also depicted, with mature (red), star (purple) and circular (yellow) sequences highlighted in different colors. The bottom of the map shows the results of miRNA alignment with predicted precursor sequences on the genome (OBS line) and experimental sequences reported in miRBase (EXP line). For each sequence, the frequency and mismatch with the genome sequence (mm sequence) are given. Mismatches are also highlighted in uppercase letters