Table 3 Summary of the classification statistics of sRNA total reads mapped to reference genome
Types | LP42 | Proportion | SP42 | Proportion | SLP42 | Proportion |
|---|---|---|---|---|---|---|
Total | 37,171,851 | 76.25% | 33,801,942 | 74.05% | 36,234,768 | 73.66% |
Known_miRNA | 28,343,600 | 1.57% | 25,031,627 | 1.55% | 26,690,850 | 1.68% |
rRNA | 583,687 | 1.24% | 524,753 | 3.88% | 608,321 | 2.39% |
tRNA | 461,665 | 0.03% | 1,311,045 | 0.03% | 864,343 | 0.03% |
snRNA | 9788 | 4.22% | 8544 | 6.06% | 9483 | 6.04% |
snoRNA | 1,568,194 | 14.73% | 2,049,038 | 12.86% | 2,187,205 | 14.32% |
Other_rfam | 5,476,628 | 0.15% | 4,345,641 | 0.12% | 5,187,079 | 0.16% |
Repeat | 57,442 | 0.30% | 40,710 | 0.26% | 56,203 | 0.32% |
Exon:+ | 112,192 | 0.04% | 87,420 | 0.03% | 114,593 | 0.04% |
Exon:- | 14,111 | 0.65% | 10,995 | 0.50% | 14,085 | 0.62% |
Intron:+ | 242,579 | 0.09% | 168,504 | 0.10% | 223,700 | 0.11% |
Intron:- | 33,927 | 0.08% | 33,749 | 0.05% | 41,029 | 0.06% |
Novel_miRNA | 28,994 | 0.64% | 17,179 | 0.51% | 20,471 | 0.60% |
Other | 239,044 | 76.25% | 172,737 | 74.05% | 217,406 | 73.66% |