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Fig. 2 | BMC Genomics

Fig. 2

From: Comparative analysis of genotype imputation strategies for SNPs calling from RNA-seq

Fig. 2

The imputation accuracy between RNA-SNPs and Chip-SNPs. (a-b) Imputation accuracy of RNA-SNPs and Chip-SNPs across autosomes; (c) The SNP count of RNA-SNPs and Chip-SNPs per Mb across autosomes; (d-e) Imputation accuracy for RNA-SNPs and Chip-SNPs across eight genomic regions; (f) Fold enrichment of RNA-SNPs and Chip-SNPs across eight genomic regions. CR, the concordance rate between imputed genotypes and true genotypes; r², the correlation between the true minor allele dose and the imputed minor allele dose. The error bar in each column represents standard error

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