Table 3 Repeat sequence and prophage statistics

ZY0804

TRF

161

2-102

8,311

0.1606

Minisatellite DNA

122

15–63

6,460

0.1248

Microsatellite DNA

15

2–10

559

0.0108

ZY0302

TRF

160

2-327

11,125

0.2164

Minisatellite DNA

112

15–63

6,546

0.1273

Microsatellite DNA

7

2–10

285

0.0055

B

Sample Name

CRISPR Start

CRISPR End

CRISPR Length (bp)

ZY0804

3,830,423

3,831,030

607

4,080,330

4,080,424

94

ZY0302

3,510,355

3,512,565

2210

4,011,706

4,011,800

94

C

Sample Name

Phage id

Phage Start

Phage End

attL Start

attL End

AttR Start

attR End

ZY0804

pp1

103,007

116,343

101,436

101,448

114,520

114,532

Pp2

266,809

292,542

265,539

265,551

292,493

292,505

Pp3

398,224

443,144

397,567

397,582

440,854

440,869

Pp4

2,500,368

2,557,616

2,503,491

2,503,503

2,555,926

2,555,938

Pp5

2,611,537

2,637,461

2,613,907

2,613,933

2,636,547

2,636,572

Pp6

2,849,395

2,857,581

2,853,383

2,853,510

2,863,233

2,863,360

Pp7

3,038,638

3,049,143

3,042,626

3,042,753

3,052,476

3,052,603

Pp8

3,549,249

3,565,329

3,553,237

3,553,364

3,563,087

3,563,214

Pp9

3,832,133

3,862,386

3,831,476

3,831,491

3,874,763

3,874,778

Pp10

3,954,193

3,976,415

3,956,563

3,956,589

3,979,203

3,979,228

Pp11

4,091,813

4,118,593

4,094,183

4,094,209

4,116,823

4,116,848

Pp12

4,442,053

4,478,683

4,441,396

4,441,411

4,484,683

4,484,698

ZY0302

Pp1

376,457

429,664

376,774

376,787

429,946

429,959

Pp2

2,264,276

2,295,477

2,265,599

2,265,613

2,301,807

2,301,821

Pp3

2,368,935

2,411,515

2,369,252

2,369,265

2,422,424

2,422,437

Pp4

2,477,232

2,498,103

2,480,935

2,480,954

2,502,396

2,502,415

Pp5

3,105,863

3,130,983

3,109,306

3,109,330

3,144,154

3,144,178

Pp6

3,652,381

3,659,000

3,656,160

3,656,304

3,657,883

3,658,027

Pp7

4,023,720

4,053,207

4,027,163

4,027,187

4,062,011

4,062,035

Pp8

4,785,891

4,802,425

4,789,334

4,789,358

4,824,182

4,824,206

Pp9

4,846,935

4,871,861

4,850,378

4,850,402

4,885,226

4,885,250