Table 3 Filtering statistics for sequencing data
Sample name | Raw reads | Clean reads | Raw bases (G) | Clean bases (G) | Error rate (%) | Q20 | Q30 | GC content |
|---|---|---|---|---|---|---|---|---|
CON-1 | 18,975,131 | 18,743,745 | 0.949 | 0.94 | 0.01% | 99.33% | 97.53% | 46.68% |
CON-2 | 16,870,425 | 16,702,572 | 0.844 | 0.84 | 0.01% | 99.39% | 97.56% | 47.52% |
CON-3 | 15,304,424 | 15,069,554 | 0.765 | 0.75 | 0.01% | 99.31% | 97.30% | 47.52% |
HT-1 | 16,083,697 | 15,928,406 | 0.804 | 0.80 | 0.01% | 98.92% | 95.81% | 48.21% |
HT-2 | 13,517,690 | 13,350,870 | 0.676 | 0.67 | 0.01% | 99.37% | 97.44% | 46.19% |
HT-3 | 16,575,758 | 16,351,985 | 0.829 | 0.82 | 0.01% | 99.28% | 96.91% | 46.92% |