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Table 1 Summary of the 74 MQTLs detected in the present study (Continues)

From: Large-scale integration of meta-QTL and genome-wide association study identifies genomic regions and candidate genes for photosynthetic efficiency traits in bread wheat

MQTL ID

Position (cM)b

CI (cM)c

No. Of QTL

Traitsd

Physical interval (Mb)

Flanking markers

MQTL-1 A.1a

79.72

0.06

20

FLW(4),FLL(4),FLA(3),SPAD(3),CCI(1),Others(5)

471.47-478.35

AX-110,567,101-AX-108,870,453

MQTL-1 A.2a

80.25

0.06

24

FLL(6),SPAD(4),FLW(4),FLA(3),Fm(2),Others(5)

533.44-535.02

wsnp_Ex_c6563_11378915-BS00110130_51

MQTL-1 A.3a

80.79

0.05

27

FLW(6),SPAD(4),FLL(4),Ci(2),Tr(2),Others(9)

532.24-544.36

wsnp_Ra_rep_c95460_83855592-BS00110877_51

MQTL-1 A.4

81.33

0.47

29

FLW(5),FLL(5),SPAD(4),FLA(3),Ci(2),Others(10)

542.43-577.84

Excalibur_c26688_138-RAC875_c53725_217

MQTL-1 A.5a

82.27

0.07

28

FLL(6),FLW(5),SPAD(4),FLA(4),Fm(2),Others(7)

582.86-589.47

RAC875_rep_c71278_345-BS00023419_51

MQTL-1B.1

99.6

0.09

30

FLL(4),SPAD(3),FLW(3),FLANG(3),Ci(2),Others(15)

303.68-478.72

BS00050630_51-BS00091871_51

MQTL-1B.2

100.86

0.6

32

FLL(4),Gs(3),PN(3),FLA(3),FLANG(3),Others(16)

536.70-638.93

RAC875_c102223_220-BS00089790_51

MQTL-1B.3a

102.88

0.15

18

FLA(2),FLL(2),SPAD(2),FLANG(2),FLR(2),Others(8)

646.67–664.30

Kukri_rep_c102001_420-Tdurum_contig55429_116

MQTL-1B.4

103.9

1.31

23

FLL(3),SPAD(2),FLANG(2),FLR(2),FLW(2),Others(12)

673.74-678.31

RAC875_c3001_1236-wsnp_Ex_c1058_2020681

MQTL-1B.5

113.36

1.11

15

Fm(3),SPAD(2),Fv/Fm(2),Fo(2),FLL(1),Others(5)

678.73-686.93

WMC367-TC88378

MQTL-2 A.1

131.57

1.76

13

SPAD(7),SD(1),Gs(1),PN(1),Ci(1),Others(2)

21.26–34.49

BS00021706_51-Ku_c23118_149

MQTL-2 A.2

134.22

2.34

17

SPAD(9),Gs(1),PN(1),Ci(1),Tr(1),Others(4)

34.66–51.49

BS00076693_51-BS00068196_51

MQTL-2 A.3a

137.06

0.12

24

SPAD(10),FLW(3),FLL(2),Gs(2),PN(2),Others(5)

62.30-68.25

BS00070693_51-GENE-1246_393

MQTL-2 A.4a

137.41

0.25

29

SPAD(9),FLL(3),FLA(3),Gs(3),PN(3),Others(8)

70.98–79.75

Jagger_c2047_362-BS00079443_51

MQTL-2 A.5

138.05

0.74

32

SPAD(9),PN(5),Gs(4),FLA(3),Ci(3),Others(8)

675.89-696.85

RAC875_rep_c113120_326-Ex_c23042_1024

MQTL-2 A.6a

138.68

0.06

28

SPAD(8),PN(4),Gs(3),Ci(3),FLW(3),Others(7)

709.04-712.72

wsnp_Ku_c54793_58953037-Ku_c13700_1189

MQTL-2 A.7

139.39

0.86

26

SPAD(8),PN(4),Gs(3),Ci(3),FLW(2),Others(6)

728.75-770.01

wsnp_Ex_c14953_23104041-Ra_c1757_256

MQTL-2B.1a

70.39

0.23

42

FLW(7),Gs(5),SPAD(5),FLL(4),Fv/Fm(4),Others(17)

10.78–14.04

BS00064570_51-Excalibur_c25445_1061

MQTL-2B.2

70.93

0.12

42

FLL(5),Gs(5),SPAD(5),FLW(5),PN(4),Others(18)

24.51–58.32

BS00070900_51-Tdurum_contig54704_176

MQTL-2B.3

71.81

0.12

43

FLW(8),SPAD(6),PN(4),Gs(4),FLANG(3),Others(18)

115.38-181.61

wsnp_BM140364B_Ta_2_3-TA001322-1176

MQTL-2B.4

72.21

0.61

42

SPAD(7),FLW(6),Gs(5),PN(4),FLANG(3),Others(17)

182.01-240.22

Kukri_c10054_567-WMC223

MQTL-2D.1

52.44

1.94

20

FLW(4),FLANG(2),FLA(2),FLL(2),Gs(2),Others(8)

6.63–20.76

RAC875_c12533_2006-JD_c63957_1176

MQTL-2D.2

61.96

1.79

6

FLL(2),FLA(2),FLW(1),FLR(1)

26.61–27.77

BS00009575_51-D_GB5Y7FA02HINSP_259

MQTL-3B.1

8.26

0.08

17

FLW(4),FLA(3),PN(3),SPAD(2),FLL(2),Others(3)

479.87–587.00

BS00023645_51-Excalibur_c26662_218

MQTL-3B.2

8.82

0.1

17

FLW(5),FLA(3),PN(3),SPAD(2),FLL(1),Others(3)

669.71-779.13

wsnp_Ex_c3257_6003626-BS00024883_51

MQTL-3D.1

67.91

1.44

4

SD(2),Fv/Fm(1),SW(1)

129.02–297.50

Xwmc533-Xbarc1119

MQTL-3D.2

82.43

10.03

2

SD(1),Fv/Fo(1)

462.53–564.60

Xwmc492-Xcfd223

MQTL-4 A.1a

114.46

0.42

7

FLL(4),FLA(2),FLW(1)

4.47–11.81

Xcfa2173-BS00022177_51

MQTL-4 A.2

119.85

1.89

14

FLA(7),FLL(6),FLW(1)

12.20-16.19

BS00065863_51-wsnp_Ex_c28429_37553452

MQTL-4 A.3

125.22

0.1

21

FLL(7),FLA(6),PN(2),SW(1),Fv/Fm(1),Others(4)

515.84–576.70

Xwmc89-wsnp_Ex_c23248_32488191

MQTL-4 A.4

125.79

0.06

21

FLL(7),FLA(6),PN(2),SW(1),Fv/Fm(1),Others(4)

591.70-617.09

wsnp_Ex_c21383_30513824-BS00022418_51

MQTL-4 A.5

126.58

0.22

20

FLL(6),FLA(6),PN(2),Tr(2),SW(1),Others(3)

636.97-735.74

BS00062059_51-wPt-1007

MQTL-4 A.6

126.77

0.11

20

FLL(7),FLA(5),PN(2),Tr(2),SW(1),Others(3)

660.79-727.11

BobWhite_c43728_100-RFL_Contig2531_987

MQTL-4D.1

80.32

4.58

3

FLW(1),PN(1),Tr(1)

238.37-274.22

Xcfd193-GENE-2128_156

MQTL-4D.2

98.68

10.97

4

Fm(1),Fv/Fm(1),SPAD(1),Fo(1)

439.66-461.51

Xcfd89-Xbcd15

MQTL-4D.3

109.55

4.59

5

Fm(1),Fv/Fm(1),SPAD(1),Fo(1),FLW(1)

477.12-484.65

Xfbb178-Xwmc399

MQTL-5 A.1

6.24

0.78

32

FLA(9),FLL(8),FLANG(6),FLR(2),SPAD(2),Others(5)

37.06–70.73

Excalibur_rep_c108066_112-Xbarc56

MQTL-5 A.2

7.79

0.28

35

FLL(11),FLA(8),FLANG(6),FLR(2),FLW(2),Others(6)

437.20-585.40

BobWhite_c17440_130-wsnp_Ex_c31799_40545376

MQTL-5 A.3

9.66

0.03

38

FLL(9),FLA(9),FLANG(6),SPAD(4),FLW(3),Others(7)

588.84-647.36

Kukri_c64923_717-Tdurum_contig15047_186

MQTL-5D.1

65.92

2.24

4

FLL(3),Chl(1)

41.81–44.61

AX-89,752,452-AX-110,024,138

MQTL-5D.2

71.55

0.65

4

SL(1),FLA(1),FLL(1),Chl(1)

229.36-290.67

Xgdm68-AX-111,117,089

MQTL-7 A.5

133.02

0.22

58

FLW(12),FLANG(8),FLL(7),FLA(7),SPAD(4),Others(20)

115.81-343.84

BS00038787_51-wsnp_Ra_c23253_32762188

MQTL-7B.1

94.93

5

4

FLA(2),FLL(1),Fv/Fm(1)

553.18-723.21

AX-109,902,366-Xbarc1073

MQTL-7B.2

103.99

0.24

9

Tr(2),Ci(2),SPAD(2),Chla/b(1),FLL(1),Others(1)

670.84-708.47

wPt-3533-Tdurum_contig44876_1362

MQTL-7B.3

105.54

1.85

10

SPAD(3),Tr(2),Ci(2),CCI(1),FLL(1),Others(1)

625.88-730.15

BobWhite_c12256_96-Excalibur_rep_c69840_85

MQTL-7B.4

107.51

0.41

19

Tr(4),Ci(3),SPAD(2),PN(2),Gs(2),Others(6)

645.12-744.11

wsnp_Ku_c16295_25148628-RAC875_c42674_239

MQTL-7B.5

109.3

0.75

18

FLW(3),FLL(3),FLA(3),Ci(2),SPAD(2),Others(5)

657.87-732.39

wsnp_BE605194B_Ta_2_7-Xbarc182

MQTL-7B.6

112.73

0.94

14

Ci(3),SPAD(2),Tr(2),Gs(1),PN(1),Others(5)

726.13-747.19

BobWhite_rep_c50003_377-wPt-2878

MQTL-7D.1

127.47

2.64

3

SPAD(1),Fv/Fo(1),Chla(1)

30.83–58.25

Xbcd588-Xgwm130

MQTL-7D.2

151.04

2.88

13

FLW(3),FLL(2),Chla(1),Fo(1),Fv(1),Others(5)

52.94-102.54

Xbarc92-IAAV2530

MQTL-7D.3

168.13

1.61

11

FLW(6),FLL(3),FLA(1),Chl(1)

211.40-364.63

wsnp_CAP11_c2839_1425826-Xwmc221

MQTL-7D.4

170.71

2.37

11

FLW(5),FLL(2),FLA(1),Chl(1),Ci(1),Others(1)

414.28-531.58

Xwmc630-Xbarc121

MQTL-7D.5

173.78

2.56

7

FLW(4),Gs(1),SPAD(1),FLL(1)

530.67-587.91

wsnp_BE497845D_Ta_1_1-Xbarc111

  1. aCore MQTL
  2. bThe most likely position on consensus map
  3. cThe confidence interval (95%) of MQTL on consensus map
  4. dFLW: flag leaf width; FLA: flag leaf area; FLANG: flag leaf angle; SPAD: the evolution of soil plant analysis development; Fo: initial fluorescence; Fv: variable fluorescence; CCI: chlorophyll index; Gs: stomatal conductance; CI: confidence interval; Fv/Fo: maximum primary yield of PSII photochemistry; Chl: chlorophyll content; Tr: transpiration rate
  5. Each MQTL only lists the trait types of the top five QTL