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Table 3 Genome-wide significant association of rice FLA traits (BLUP)

From: Genome-wide association study identifies elite alleles of FLA2 and FLA9 controlling flag leaf angle in rice

QTLs

Chromosome

Position

Allele

Log10(P)a

MAFb

Known

Genes/QTLs

qFLA1.2

1

13,332,762

G/A

5.21–5.83

0.38

 

qFLA1.4

1

24,305,157

T/C

5.19–5.68

0.38

 

qFLA2

2

32,057,055

C/T

5.11–6.75

0.36

 

qFLA7.2

7

29,419,260

C/T

5.22

0.06

qFLA7e [7]

qFLA8.1

8

15,708,371

A/G

5.08–5.77

0.11

 

qFLA8.2

8

21,508,180

A/G

5.01–6.96

0.32

qFLA8f [7]

qFLA9.1

9

1,907,184

C/T

5.19

0.07

 

qFLA9.2

9

4,404,631

C/T

5.16–5.88

0.06

 
  1. aThe -log10(P) value and -log10(P) value range obtained by GWAS in single environments (BLUP) are described [58]
  2. bMinimum allele frequency
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BMC Genomics

ISSN: 1471-2164

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