Skip to main content

Table 4 Analysis of antibiotic and secondary metabolite biosynthesis gene clusters in strain B-JK4-1

From: The comparative genomic analysis provides insight into the divergent inhibitory activity metabolites in pathogen-driven three Pseudomonas palleroniana strains against primary pathogens of Pseudostellaria heterophylla

Cluster ID

Type

Start

End

Similar Cluster

Similarity (%)

Gene No.

cluster5

Transketolase

2,217,905

2,315,799

sessilin A

100

37

cluster3

arylpolyene

508,691

552,267

APE Vf

45

40

cluster8

RHS repeat-associated core domain-containing protein

3,672,098

3,735,358

viscosin

43

34

cluster11

-

4,012,179

4,057,593

syringomycin

35

36

cluster1

MULTISPECIES: DUF2388 domain-containingprotein

123,659

152,313

ambactin

25

21

cluster10

betalactone

3,881,013

3,904,094

fengycin

13

19

cluster6

ABC transporter permease subunit

2,486,586

2,551,902

pyoverdin

10

36

cluster13

NRPS

4,357,535

4,410,423

pyoverdin

10

39

cluster2

EAL domain-containing protein

261,406

311,237

ashimides

8

45

cluster7

thiopeptide

3,361,369

3,387,306

lipopolysaccharide

5

28

cluster4

Hypothetical protein

1,526,930

1,535,633

-

-

12

cluster9

MULTISPECIES: hypothetical protein

3,827,898

3,837,725

-

-

14

cluster12

NAGGN

4,305,742

4,320,460

-

-

11

cluster14

siderophore

4,496,304

4,508,233

-

-

11

cluster15

Fatty acid desaturase

-

-

-

-

-

cluster16

TfuA-related

4,895,185

4,917,073

-

-

25

cluster17

bacteriocin

6,357,100

6,367,946

-

-

10

  1. Note “-” indicates the gene cluster in the B-JK4-1 genome that has not been matched in the MiBIG database