Table 5 Analysis of antibiotic and secondary metabolite biosynthesis gene clusters in strain HP-YBB-1B
Cluster ID | Type | Start | End | Similar Cluster | Similarity (%) | Gene No. |
|---|---|---|---|---|---|---|
cluster5 | MULTISPECIES: hypothetical protein | 2,188,192 | 2,283,762 | putisolvin | 100 | 39 |
cluster3 | arylpolyene | 502,116 | 545,692 | APE Vf | 45 | 42 |
cluster8 | RHS repeat-associated core domain-containing protein | 3,849,171 | 3,911,487 | viscosin | 43 | 34 |
cluster11 | - | 4,182,850 | 4,228,515 | syringomycin | 35 | 40 |
cluster1 | MULTISPECIES: DUF2388 domain-containing protein | 107,415 | 136,069 | ambactin | 25 | 21 |
cluster10 | betalactone | 4,048,500 | 4,071,582 | fengycin | 13 | 19 |
cluster6 | ABC transporter permease subunit | 2,434,270 | 2,499,673 | pyoverdin | 10 | 36 |
cluster13 | NRPS | 4,571,859 | 4,624,747 | pyoverdin | 9 | 39 |
cluster2 | EAL domain-containing protein | 257,275 | 307,129 | ashimides | 8 | 47 |
cluster7 | thiopeptide | 3,543,310 | 3,569,156 | lipopolysaccharide | 5 | 25 |
cluster4 | Hypothetical protein | 1,503,900 | 1,512,603 | - | - | 12 |
cluster9 | Hypothetical protein | 3,995,676 | 4,005,502 | - | - | 14 |
cluster12 | NAGGN | 4,520,119 | 4,534,837 | - | - | 10 |
cluster14 | siderophore | 4,708,904 | 4,720,833 | - | - | 11 |
cluster15 | Fatty acid desaturase | - | - | - | - | - |
cluster16 | TfuA-related | 5,131,849 | 5,153,737 | - | - | 25 |
cluster17 | bacteriocin | 6,491,457 | 6,502,303 | - | - | 10 |