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Table 1 Gene ontology (GO) enriched categories for biological process, cellular component, and molecular function based on genes overlapped with all compiled CNVRs

From: Detecting and characterizing copy number variation in a large commercial U.S. Holstein cattle population

GO ID

Description

P(FDR)

Biological process

  

GO:0008150

biological process

4.91E-18

GO:0009987

cellular process

1.62E-14

GO:0050896

response to stimulus

9.63E-07

GO:0071704

organic substance metabolic process

2.16E-06

GO:0008152

metabolic process

6.58E-06

GO:0051716

cellular response to stimulus

9.07E-06

GO:0044238

primary metabolic process

1.33E-05

GO:0065007

biological regulation

3.10E-05

GO:0006807

nitrogen compound metabolic process

4.85E-05

GO:0050789

regulation of biological process

5.67E-05

GO:0044237

cellular metabolic process

7.25E-05

GO:0006950

response to stress

7.69E-05

GO:0050794

regulation of cellular process

0.0004

GO:0043170

macromolecule metabolic process

0.0012

GO:1901564

organonitrogen compound metabolic process

0.0022

GO:0034641

cellular nitrogen compound metabolic process

0.0049

GO:1901360

organic cyclic compound metabolic process

0.0119

GO:0006952

defense response

0.0120

GO:0006725

cellular aromatic compound metabolic process

0.0141

GO:0007165

signal transduction

0.0145

GO:0009607

response to biotic stimulus

0.0188

GO:0023052

signaling

0.0217

GO:0032501

multicellular organismal process

0.0278

GO:0043207

response to external biotic stimulus

0.0280

GO:0051707

response to other organism

0.0287

GO:0007154

cell communication

0.0305

GO:0080134

regulation of response to stress

0.0353

GO:0046483

heterocycle metabolic process

0.0374

GO:0098542

defense response to other organism

0.0425

GO:0006139

nucleobase-containing compound metabolic process

0.0440

GO:0002376

immune system process

0.0448

Cellular component

  

GO:0110165

cellular anatomical entity

2.45E-20

GO:0005575

cellular component

5.30E-20

GO:0043227

membrane-bounded organelle

3.57E-12

GO:0005622

intracellular anatomical structure

3.69E-12

GO:0043226

organelle

1.34E-11

GO:0043229

intracellular organelle

6.78E-11

GO:0043231

intracellular membrane-bounded organelle

9.60E-11

GO:0005737

cytoplasm

2.14E-09

GO:0005576

extracellular region

1.64E-07

GO:0016020

membrane

2.44E-06

GO:0005615

extracellular space

3.37E-05

GO:0032991

protein-containing complex

0.0003

GO:0005634

nucleus

0.0011

GO:0071944

cell periphery

0.0143

GO:0012505

endomembrane system

0.0197

GO:0031974

membrane-enclosed lumen

0.0204

GO:0070013

intracellular organelle lumen

0.0216

GO:0043233

organelle lumen

0.0230

Molecular function

  

GO:0003674

molecular function

2.42E-14

GO:0005488

binding

5.35E-10

GO:0003824

catalytic activity

0.0009

GO:0097159

organic cyclic compound binding

0.0125

GO:0004888

transmembrane signaling receptor activity

0.0139

GO:0005515

protein binding

0.0153

GO:1901363

heterocyclic compound binding

0.0255