Table 1 Degradome validation of miRNA family targets and target functions

miR156

Vitvi10g04328_t001

885

2

112

14.58

2

167

10.9

2

squamosa_promoter_binding_protein-like_3

Vitvi12g00280_t001

704

0

1

0.82

4

NA

NA

NA

squamosa_promoter_binding_protein-like_4

Vitvi11g00909_t001

1116

0.5

1

6.67

4

1

7.69

4

squamosa_promoter_binding_protein-like_2

Vitvi17g00473_t001

1242

0.5

1

25

4

NA

NA

NA

Squamosa_promoter-binding_protein

Vitvi01g01837_t001

1330

0.5

3

25

1

1

5.56

4

Squamosa_promoter-binding_protein

Vitvi01g01660_t001

1354

0.5

1

6.25

4

2

10.53

4

squamosa_promoter_binding_protein-like_2

Vitvi01g01678_t001

891

0.5

NA

NA

NA

1

100

4

Squamosa_promoter-binding_protein

Vitvi17g00100_t001

1223

0.5

NA

NA

NA

1

33.33

4

Squamosa_promoter-binding_protein

miR159

Vitvi13g01266_t001

1732

2.5

13

48.15

0

13

44.83

0

myb_domain_protein_33

miR160

Vitvi18g00337_t001

1304

0.5

2

1.36

2

4

1.71

2

auxin_response_factor_17

Vitvi13g02058_t001

1337

1

3

4.05

2

2

1.67

2

auxin_response_factor_16

Vitvi06g00272_t001

1719

1

1

3.57

4

NA

NA

NA

auxin_response_factor_10

Vitvi08g01033_t001

2190

0.5

NA

NA

NA

1

0.71

4

auxin_response_factor_16

miR162

Vitvi15g00864_t001

3261

2

3

0.45

2

1

0.1

4

dicer-like_1

miR164

Vitvi17g00622_t001

997

1

3

21.43

0

4

12.9

0

NAC_domain_containing_protein_100

Vitvi19g01484_t001

809

2

3

6.52

2

3

3.61

2

NAC_domain_containing_protein_1

miR166

Vitvi09g00310_t001

562

1

7

3.45

0

23

7.28

0

Homeobox-leucine_zipper_family_protein

Vitvi06g00276_t001

574

1.5

16

6.5

2

28

6.97

2

Homeobox-leucine_zipper_family_protein

Vitvi13g00609_t001

763

1.5

15

23.81

0

11

13.58

0

Homeobox-leucine_zipper_family_protein

Vitvi10g00913_t001

806

1.5

19

9.79

0

36

12.46

0

Homeobox-leucine_zipper_family_protein

Vitvi04g00287_t001

1036

1.5

7

11.11

0

23

19.49

0

Homeobox-leucine_zipper_family_protein

miR167

Vitvi04g00824_t001

1841

4

165

35.56

2

226

34.35

2

auxin_response_factor_8

Vitvi10g00854_t001

3613

4

8

4.88

0

14

6.48

0

auxin_response_factor_8

Vitvi12g00102_t001

3855

4

14

20

0

21

22.58

0

auxin_response_factor_6

miR168

Vitvi17g01218_t001

702

4

129

11.92

0

190

13.59

0

argonaute 1

miR169

Vitvi08g01883_t001

1510

3

1

2.5

4

2

3.45

2

nuclear_factor_Y,_subunit_A1

Vitvi09g00133_t001

1373

1.5

2

1.4

3

NA

NA

NA

nuclear_factor_Y,_subunit_A3

Vitvi08g00292_t001

1357

3

9

2.24

2

21

3.4

2

nuclear_factor_Y,_subunit_A10

miR171

Vitvi04g01247_t001

599

0

61

15.1

0

70

14.4

2

GRAS_family_transcription_factor

Vitvi15g00680_t001

1601

0

53

4.22

0

83

4.32

0

GRAS_family_transcription_factor

Vitvi02g00536_t001

1664

1

128

10.48

0

114

6.75

0

GRAS_family_transcription_factor

miR172

Vitvi13g00529_t001

1348

1

18

17.14

0

17

9.24

0

related_to_AP2.7

Vitvi06g00360_t001

1825

1.5

3

9.38

1

1

3.13

4

related_to_AP2.7

Vitvi07g01706_t001

1934

1

22

8.12

0

26

4.96

0

APETALA2

miR319

Vitvi06g01139_t001

1254

4

20

41.67

0

36

48.65

0

myb_domain_protein_33

Vitvi12g00219_t001

786

4.5

1

0.13

4

4

0.38

3

TCP_family_transcription_factor_4

miR393

Vitvi00g04585_t001

1516

1

2

18.18

1

4

26.67

0

F-box/RNI-like_superfamily_protein

Vitvi07g00248_t001

1637

1

29

37.18

0

33

31.73

0

F-box/RNI-like_superfamily_protein

Vitvi14g04156_t001

2014

1

2

13.33

1

4

20

0

F-box/RNI-like_superfamily_protein

Vitvi14g01482_t001

2172

1

98

7.52

0

116

5.54

0

auxin_signaling_F-box_3

miR395

Vitvi18g00363_t001

77

1.5

NA

NA

NA

4

1.47

2

sulfate_transporter_2;1

miR396

Vitvi02g00796_t001

250

2.5

6

1.32

2

7

1.03

2

leucine_zipper_transcription_factor_16

Vitvi08g01498_t001

548

3

4

100

3

7

58.33

0

growth-regulating_factor_4

Vitvi02g00239_t001

671

3

3

13.64

1

3

17.65

1

growth-regulating_factor_8

miR398

Vitvi14g02607_t005

69

4

367

21.79

0

625

22.84

0

copper/zinc_superoxide_dismutase_1

Vitvi06g01349_t001

477

6.5

4

1.57

2

5

1.32

2

copper/zinc_superoxide_dismutase_2

Vitvi02g00444_t001

773

7

8

2.4

2

14

2.71

2

copper_chaperone_for_SOD1

Vitvi11g01445_t001

77

4

18

9.78

2

11

5.76

2

blue-copper-binding_protein

miR828

Vitvi17g00822_t001

360

4

2

33.33

1

4

80

0

myb_domain_protein_66

Vitvi02g01732_t001

478

1

23

88.46

0

23

88.46

0

myb_domain_protein_66

Vitvi14g03020_t001

492

4

3

75

0

7

100

3

myb_domain_protein_23

miR858

Vitvi14g00974_t001

347

5.5

4

2.58

2

2

0.57

4

myb_domain_protein_4

Vitvi11g00097_t001

362

2.5

22

25.88

0

50

36.5

0

myb_domain_protein

Vitvi06g00414_t001

369

4.5

1

4.55

4

NA

NA

NA

myb_domain_protein_59

Vitvi07g00393_t001

433

5

14

10.85

0

13

6.57

0

myb_domain_protein_12

Vitvi09g00112_t001

451

4.5

41

28.47

0

66

27.16

0

myb_domain_protein_7

Vitvi04g00160_t001

303

4.5

NA

NA

NA

3

75

0

myb_domain_protein_66

Vitvi08g01797_t001

324

5

NA

NA

NA

3

0.55

3

myb_domain_protein_5

tasiRNA3

Vitvi01g01759_t001

1203

2

4

0.48

2

5

0.42

2

auxin_response_factor_2

Vitvi10g00510_t001

1431

0

3

0.08

3

7

0.13

3

auxin-responsive_factor

1638

0

4

0.11

3

11

0.2

2

auxin-responsive_factor

Vitvi17g00036_t001

1738

0.5

17

2.79

2

15

1.62

2

auxin_response_factor_2