Dynamics of small RNAs in a red-fruited wine grape cultivar infected with Grapevine red blotch virus

BMC Genomics

Table 3 GRBV-derived siRNAs with putative targets in V. vinifera transcriptome

sRNA	Sequence	Start-Stop	ORF
grbvasRNA1	AAACGACGTGTCTGGTGGAGG	1246–1266	V1
grbvasRNA2	ACGACTGGGAGGAGTTCTGCC	761–781	V2
grbvasRNA3	AGGTGTTGTGCTTCCGTCGGA	946–966	V1
grbvasRNA4	ATGATGGGTTAGGGGATGAGG	389–409	V2
grbvasRNA5-3p	ATGGGCTATATCATTGGGAAT	2222–2202	C2
grbvasRNA6-3p	ATGTGGCAATGACTCCTGCGG	1192–1172	V1
grbvasRNA7a	TTGTGGTGATGATGATGGGTT	378–398	V2
grbvasRNA7b	TTTGTGGTGATGATGATGGGT	377–397	V2

Sequences of identified grbvasRNAs with potential targets in the V. vinifera genome and locations within the GRBV genome. The “-3p” suffix indicates that the detected vsiRNA sequence was the reverse complement of the associated sequence in the GRBV reference genome. The other identified vsiRNAs aligned normally in the 5’-3’ direction

ISSN: 1471-2164