Table 7 Comparison of tPoD values derived for CBN from microarray and RNA-seq*
GO/Pathway ID | GO/Pathway Name | # All Genes | # Genes | Percentage | BMC Median | BMCL Median | BMCU Median |
|---|---|---|---|---|---|---|---|
Microarray | |||||||
 GO:0042448 (6) | Progesterone metabolic process | 13 | 3 | 23.1 | 0.223 | 0.141 | 0.369 |
 GO:1902644 (5) | Tertiary alcohol metabolic process | 15 | 5 | 33.3 | 0.223 | 0.141 | 0.369 |
 GO:0030638 (4) | Polyketide metabolic process | 10 | 5 | 50.0 | 0.223 | 0.141 | 0.369 |
 GO:0030647 (7) | Aminoglycoside antibiotic metabolic process | 10 | 5 | 50.0 | 0.223 | 0.141 | 0.369 |
 GO:0044598 (4) | Doxorubicin metabolic process | 10 | 5 | 50.0 | 0.223 | 0.141 | 0.369 |
 GO:0044597 (5) | Daunorubicin metabolic process | 9 | 5 | 55.6 | 0.223 | 0.141 | 0.369 |
 GO:0009753 (5) | Response to jasmonic acid | 4 | 3 | 75.0 | 0.223 | 0.141 | 0.369 |
 GO:0071395 (6) †| Cellular response to jasmonic acid stimulus | 4 | 3 | 75.0 | 0.223 | 0.141 | 0.369 |
 R-HSA-5336415 | Uptake and function of diphtheria toxin | 6 | 4 | 66.7 | 0.310 | 0.185 | 0.594 |
 172 | Acetylation and deacetylation of RelA in the nucleus | 16 | 3 | 18.8 | 0.342 | 0.216 | 0.588 |
 1598 | NF-kappaB activation through FADD/RIP-1 pathway | 12 | 3 | 25.0 | 0.342 | 0.216 | 0.588 |
RNA-seq | |||||||
 GO:0032094 (4) | Response to food | 24 | 4 | 16.7 | 0.342 | 0.153 | 0.931 |
 R-HSA-9818027 | NFE2L2 regulating antioxidant/detoxification enzymes | 17 | 8 | 47.1 | 0.282 | 0.167 | 0.513 |
 734†| Nucleotide di- and triphosphate biosynthesis and interconversion | 18 | 3 | 16.7 | 0.160 | 0.099 | 0.281 |