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Table 3 Types of SNP and indel mutations in the candidate genes

From: Fine mapping and candidate gene analysis of major QTLs for number of seeds per pod in Arachis hypogaea L.

Candidate genes

Start position

End position

JNH3

R45

Mutant annotation

Arahy.XW3T4W

112,790,246

112,800,686

C

T

Intergenic region

Arahy.8F881C

112,810,188

112,822,568

A

C

Upstreamgene variant

Arahy.75YJ3Z

112,812,745

112,815,516

A

C

Missense variant

Arahy.3TDE18

112,849,718

112,859,150

C

T

Intergenic region

Arahy.G05VUU

112,870,426

112,875,195

G

T

Intergenic region

Arahy.NHVJ82

112,958,766

112,962,321

C

T

Intergenic region

Arahy.9468DL

112,980,265

112,992,011

G

T

Intergenic region

Arahy.KZCX9C

113,000,931

113,004,034

G

T

Downstreamgene variant

Arahy.ZAU2KF

113,004,585

113,009,189

GA

G

5’UTR variant

Arahy.ELL9VR

113,010,087

113,014,838

GA

G

Downstream gene variant

Arahy.GYF1N1

113,050,568

113,053,769

C

CA

Intergenic region

Arahy.GC5VJY

114,036,957

114,046,905

G

A

Upstream gene variant

Arahy.JNSA3Z

114,051,294

114,053,527

G

A

Intergenic region

Arahy.04JNDX

114,143,849

114,145,495

A

G

Intergenic region

Arahy.DEP6R1

114,158,088

114,158,451

A

G

Intergenic region

Arahy.KL5LPC

114,160,087

114,163,608

T

G

Intron variant

Arahy.42CZAS

114,172,195

114,175,899

T

A

Intron variant

Arahy.FJSM0P

114,212,023

114,212,927

A

T

Downstream gene variant

Arahy.L8YGTT

114,216,085

114,221,210

A

T

Intergenic region

Arahy.N0KYQA

114,257,350

114,262,137

C

T

Intergenic region

Arahy.H5PXMS

114,268,287

114,275,077

C

T

Intergenic region

Arahy.T57XL4

114,593,865

114,608,503

C

T

Intron variant

Arahy.W4LCKL

114,650,557

114,654,924

G

A

Intron variant

Arahy.FI0VBI

114,667,183

114,681,730

CT

C

Intron variant

Arahy.UME9CN

114,736,284

114,739,868

G

GT

Downstream gene variant

Arahy.FXE6P8

114,742,343

114,746,606

G

GT

Intergenic region

Arahy.X9NSEY

114,746,628

114,750,147

C

T

Intergenic region

Arahy.I9L5JE

114,771,575

114,776,586

C

T

Intergenic region

Arahy.VWQQ3X

114,797,559

114,798,968

A

AT

Intergenic region

Arahy.G1TI3A

114,824,454

114,833,063

A

AT

Intergenic region

Arahy.MIS9XN

114,929,088

114,931,838

C

T

Intergenic region

Arahy.JYC97M

114,944,545

114,951,892

C

T

Intergenic region

Arahy.ZLV99U

114,952,416

114,957,915

C

CA

Intergenic region

Arahy4.G0ENY

114,967,166

114,970,904

C

CA

Upstream gene variant

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BMC Genomics

ISSN: 1471-2164

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