Table 4 Annotation of DEGs in qRMSPA09.1 and qRMSPA09.2 candidate intervals
Loci | Candidate genes | Gene family or homologous gene | Gene prediction | SLH-FFPKM | JNH3-FFPKM | SLH-ZFPKM | JNH3-ZFPKM |
|---|---|---|---|---|---|---|---|
qRMSPA09.1 | Arahy.XW3T4W | MATE | MATE efflux family protein | 2.41 | 0.22 | 0.71 | 2.23 |
| Â | Arahy.3TDE18 | DExH15 | ATP-dependent RNA helicase | 1.90 | 0.81 | 3.76 | 3.75 |
| Â | Arahy.G05VUU | DB3S | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 3.28 | 1.19 | 4.37 | 5.09 |
| Â | Arahy.ZAU2KF | PI4KA | lipid phosphate phosphatase | 3.48 | 1.31 | 6.01 | 9.26 |
| Â | Arahy.GYF1N1 | Bem1p | Octicosapeptide/Phox/Bem1p family protein | 34.61 | 12.40 | 31.08 | 53.93 |
qRMSPA09.2 | Arahy.04JNDX | MYB51 | MYB transcription factor MYB51 | 9.89 | 3.72 | 2.89 | 3.93 |
| Â | Arahy.DEP6R1 | / | uncharacterized protein LOC100306658 | 68.39 | 45.80 | 75.06 | 62.98 |
| Â | Arahy.KL5LPC | AMMECR1 | AMMECR1 family | 31.82 | 9.98 | 23.98 | 16.59 |
| Â | Arahy.42CZAS | FADS2 | fatty acid desaturase2 | 14.25 | 5.55 | 1.27 | 0.14 |
| Â | Arahy.N0KYQA | / | unknown protein | 96.38 | 34.12 | 39.35 | 49.75 |
| Â | Arahy.X9NSEY | HSP40 | Heat shock protein DnaJ domain protein | 9.18 | 3.32 | 3.20 | 4.61 |
| Â | Arahy.G1TI3A | / | Major facilitator superfamily protein | 2.70 | 0.27 | 4.76 | 10.00 |