Table 7 Repeat characterization of Bcop_v2 using RepeatMasker

Retroelements

-

-

39,488

15,747,087

5.09

SINEs

-

6,623

1,245,502

0.40

Penelope

-

1,629

562,250

0.18

LINEs

-

21,699

9,895,637

3.2

L2/CR1/Rex

4,955

2,617,504

0.85

R1/LOA/Jockey

1,103

318,765

0.10

R2/R4/NeSL

417

157,115

0.05

RTE/Bov-B

3,378

1,938,253

0.63

L1/CIN4

346

57,084

0.02

LTR elements

-

11,166

4,605,948

1.49

BEL/Pao

2,186

1,353,548

0.44

Ty1/Copia

1,472

639,157

0.21

Gypsy/DIRS1

5,659

1,935,158

0.62

Retroviral

1,552

646,987

0.21

DNA transposons

-

-

51,336

10,756,047

3.47

hobo-Activator

-

16,061

2,460,594

0.79

Tc1-IS630-Pogo

-

878

288,734

0.09

En-Spm

-

0

0

0

MuDR-IS905

-

0

0

0

PiggyBac

-

227

77,358

0.02

Tourist/Harbinger

-

71

9,265

0.00

Other

-

397

127,501

0.04

Rolling-circles

-

-

12,582

4,339,527

1.40

Unclassified

-

-

512,007

91,528,113

29.56

Total interspersed repeats

-

-

-

11,803,1247

38.12

Small RNA

1,336

451,128

0.15

Satellites^a

1,734

225,658

0.07

Simple repeats^a

49,847

2,952,948

0.95

Low complexity^a

10,001

459,419

0.15

Total bases masked^b

-

-

-

126,310,607

40.79