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Table 1 Annotation of pre-selected keywords in each of the depicted differential expression analyses

From: Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

Keywords

Differential expression analysis

Anterior end

Midbody

Stolon

Male

Female

Non-reproductive

Global

N

%

N

%

N

%

N

%

N

%

N

%

N

%

Reproduction

0

0.00

0

0.00

0

0.00

5

1.62

1

0.44

1

0.81

6

0.56

Development

20

46.51

3

50.00

35

37.23

155

50.16

104

45.81

70

56.45

521

48.24

Sex

1

2.33

0

0.00

1

1.06

14

4.53

4

1.76

4

3.23

19

1.76

Gametogenesis

0

0.00

0

0.00

0

0.00

2

0.65

1

0.44

0

0.00

5

0.46

Oocyte/oogenesis/ovochymase

0

0.00

0

0.00

2

2.13

6

1.94

8

3.52

2

1.61

25

2.31

Testis/sperm

5

11.63

0

0.00

11

11.7

26

8.41

20

8.81

11

8.87

99

9.17

Germline

0

0.00

0

0.00

1

1.06

6

1.94

4

1.76

1

0.81

16

1.48

Relaxin

0

0.00

0

0.00

0

0.00

1

0.32

1

0.44

1

0.81

1

0.09

Hormonal activity/serotonin/dopamine

3

6.98

0

0.00

4

4.26

43

13.92

26

11.45

13

10.48

114

10.56

Morphogenesis

12

27.91

2

33.33

25

26.60

80

25.89

49

21.59

41

33.06

243

22.50

Gonad

0

0.00

0

0.00

4

4.26

7

2.27

5

2.2

1

0.81

21

1.94

Ecdysone/molting

0

0.00

0

0.00

1

1.06

4

1.29

1

0.44

1

0.81

7

0.65

Eye/photo/retinal/-ol/visual/sox/opsin

4

9.30

1

16.67

6

6.38

54

17.48

39

17.18

24

19.35

182

16.85

Neurogenesis/neural tube

1

2.33

0

0.00

5

5.32

31

10.03

18

7.93

15

12.10

69

6.39

Embryonic

4

9.30

1

16.67

11

11.7

33

10.68

19

8.37

15

12.10

109

10.09

Farnesoate

0

0.00

0

0.00

0

0.00

3

0.97

1

0.44

2

1.61

6

0.56

Proliferation

8

18.60

3

50.00

13

13.83

57

18.45

58

25.55

21

16.94

188

17.41

Circadian rhythm

0

0.00

0

0.00

5

5.32

8

2.59

9

3.96

1

0.81

35

3.24

Hox

0

0.00

0

0.00

5

5.32

3

0.97

9

3.96

6

4.84

29

2.69

Fox

0

0.00

0

0.00

0

0.00

3

0.97

1

0.44

3

2.42

10

0.93

WNT

5

11.63

0

0.00

8

8.51

13

4.21

10

4.41

7

5.65

50

4.63

Notch

1

2.33

0

0.00

1

1.06

25

8.09

21

9.25

13

10.48

47

4.35

BMP

5

11.63

1

16.67

2

2.13

9

2.91

3

1.32

6

4.48

25

2.31

Apoptosis

9

20.93

1

16.67

16

17.02

53

17.15

45

19.82

22

17.74

206

19.07

Cell cycle

4

9.30

2

33.33

19

20.21

21

6.8

33

14.54

6

4.84

126

11.67

Senescence

1

2.33

0

0.00

1

1.06

1

0.32

4

1.76

0

0.00

13

1.20

Number of annotated DE transcripts

43

 

6

 

94

 

309

 

227

 

124

 

1080

 

Total number of DE transcripts

175

 

32

 

456

 

1578

 

1062

 

583

 

5202

 
  1. Count of keyword occurrences within the annotated, differentially expressed transcripts resulting from each differential expression analysis. Keywords are assigned by searching Gene Ontology annotation of BLASTx and Pfam output for the shown terms, as well as by scanning Pfam results for IDs of related protein domains. Percentages are given regarding the number of annotated, differentially expressed transcripts per analysis. Percentage values > 10% are highlighted. Note that the sum of occurrences of each keyword within the comparison does not add up to the number of annotated, differentially expressed values because not all annotated, differentially expressed transcripts are related to the keywords selected here and the same transcript can be related to more than one function or keyword. Percentages within each comparison do not add up to 100% for these reasons
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BMC Genomics

ISSN: 1471-2164

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