Table 2 Mobilome of representative taxa of the E. hormaechei complex. The range in number and average number (in brackets) of plasmid, phage, ICE elements and transposable elements are shown. The contribution of plasmid, phage and ICE elements to the total genome size and number of proteins encoded on the genomes are indicated
Species/subspecies | E. hoffmannii (50) | E. hormaechei (50) | E. xiangfangensis (150) | E. xiangfangensis subsp. oharae (50) | E. xiangfangensis subsp. steigerwaltii (50) | E. xiangfangensis subsp. xiangfangensis (50) | E. quasihormaechei (1) |
|---|---|---|---|---|---|---|---|
Plasmids (#) | 0—9 (2.93) | 0—7 (4.67) | 0—7 (3.20) | 0—6 (3.31) | 0—6 (3.05) | 0—7 (3.24) | 1* |
Plasmid DNA complement (kb) | 0—803 (306) | 0—592 (237) | 0—697 (263) | 0—488 (116) | 0—650 (328) | 0—697 (343) | 94 |
Genomic DNA proportion (%) | 0—14.44 (5.96) | 0—11.41 (4.60) | 0—12.58 (4.57) | 0—9.36 (2.14) | 0—11.81 (5.56) | 0—12.58 (5.99) | 2.06 |
Plasmid protein complement | 0—933 (333) | 0—653 (256) | 0—766 (288) | 0—541 (131) | 0—690 (355) | 0—766 (375) | 100 |
Genomic protein proportion (%) | 0—17.55 (6.98) | 0—13.31 (5.33) | 0—14.49 (5.31) | 0—11.05 (2.53) | 0—13.29 (6.42) | 0—14.49 (6.98) | 2.39 |
Phage elements (#) | 0—13 (5.76) | 1—8 (4.00) | 0—14 (5.93) | 1—8 (4.56) | 0—14 (6.66) | 2—12 (6.56) | 4 |
Phage DNA complement (kb) | 0—519 (232) | 22—337 (143) | 0—649 (245) | 23—322 (175) | 0—528 (266) | 93—649 (296) | 113 |
Genomic DNA proportion (%) | 0—9.33 (4.54) | 0.46—6.86 (2.96) | 0—12.38 (4.83) | 0.47—6.70 (3.63) | 0—9.86 (5.07) | 1.79—12.38 (5.81) | 2.47 |
Phage protein complement | 0—552 (274) | 25—426 (167) | 0—829 (298) | 34—363 (209) | 0—666 (322) | 115—829 (363) | 102 |
Genomic protein proportion (%) | 0—11.08 (5.75) | 0.56—9.32 (3.71) | 0—19.32 (6.28) | 0.78—8.10 (4.67) | 0—13.02 (6.54) | 2.41—19.32 (7.63) | 2.44 |
ICE elements (#) | 0 -2 (0.12) | 0—1 (0.10) | 0—2 (0.31) | 0 -1 (0.06) | 0—2 (0.62) | 0—1 (0.26) | 0 |
ICE DNA complement (kb) | 0—140 (9) | 0—55 (5) | 0—272 (27) | 0—99 (5) | 0—272 (52) | 0—137 (24) | 0 |
Genomic DNA proportion (%) | 0—2.81 (0.18) | 0—1.12 (0.10) | 0—4.81 (0.52) | 0—2.03 (0.10) | 0—4.81 (0.99) | 0—2.71 (0.47) | 0 |
ICE protein complement | 0—148 (9) | 0—46 (4) | 0—278 (27) | 0—104 (5) | 0—278 (54) | 0—144 (23) | 0 |
Genomic protein proportion (%) | 0—3.15 (0.19) | 0—1.04 (0.09) | 0—5.18 (0.56) | 0—2.40 (0.11) | 0—5.18 (1.11) | 0—3.11 (0.44) | 0 |
Transposable elements (#) | 5—136 (51.74) | 12—84 (34.88) | 1—121 (45.63) | 1—112 (39.04) | 1—121 (50.48) | 5—113 (47.36) | 5 |