Table 2 Genome specifications for species used for construction (Const) and annotation (Annot) of the Actiniaria-REPlib_v1 library. Abbreviations– CVD: computationally very demanding; FC: Flow Cytometry; NA: not availablem; NGS: Next Generation Sequencing; tDNA: Mitogenomes used for phylogenetic analysis; SeqTech: Sequencing technologies (Illumina (I), PacBio (PB), and Oxford Nanopore (ONT)). ‘*’: de novo assembly of mitogenomes deposited at NCBI. ‘**’: de novo assembly of genome deposited at NCBI
Nr | Taxon | Genome size (technique) (Mb) | Scaffold N50 (count) | SeqTech | NCBI BioSample/Reference | Assembly level | mtDNA | Const | Annot |
|---|---|---|---|---|---|---|---|---|---|
Suborder Anenthemonae | |||||||||
Superfamily Actinernoidea | |||||||||
Family Actinernidae | |||||||||
1 | Actinernus sp. | NA (FC); 1,400 (NGS) | 71.9 Mb (1,812) | PB + I | SAMN31231981 | Scaffold | BK069892* | X | X |
Superfamily Edwardsioidea | |||||||||
Family Edwardsiidae | |||||||||
2 | Edwardsia elegans | NA (FC); 397 (NGS) | NA | I | SAMN43163413 | Contig | PRJNA1247437* | X | X |
3 | Nematostella vectensis | 0.34 (FC); 270 (NGS) |  ~ 17 Mb (47) | PB + I | SAMEA8534429 | Chromosome | NC_008164.1 | X | X |
4 | Scolanthus callimorphus | NA (FC); 596.8 (NGS) |  ~ 31 Mb (303) | PB + I | SAMN16376567 | Chromosome | BK068674* | X | X |
Suborder Enthemonae | |||||||||
Superfamily Actinioidea | |||||||||
Family Actiniidae | |||||||||
5 | Anemonia viridis | NA (FC); 401 (NGS) | 2.1 kb (1,1 Mb) | I | SAMEA104356964 | Scaffold | NC_037177 | CVD | X |
6 | Actinia equina | NA (FC); 409 (NGS) | NA | PB | SAMN09602970 | Contig | NA | X | NA |
7 | Actinia mediterranea | NA (FC); NA (NGS) | NA | I | SAMEA115283892 | NA | BK069890* | NA | X |
8 | Actinia tenebrosa | NA (FC); 238.2 (NGS) |  ~ 188 kb (4,002) | I | SAMN10439458 | Scaffold | NC_044902.1 | X | X |
9 | Actinostella flosculifera | NA (FC); ~ 269 (NGS) |  ~ 3.1 kb (62,998) | I | SAMN45085772** | Scaffold | PV232310* | X | X |
10 | Anthopleura artemisia | NA (FC); ~ 342 (NGS) | 15 Mb (1,169) | PB + Hi-C | SAMEA112465889 | Chromosome | BK069895* | X | X |
11 | Anthopleura elegantissima | NA (FC); 322 (NGS) |  ~ 322 kb (4,216) | I + ONT | SAMN43844512 | Scaffold | NA | X | NA |
12 | Anthopleura sola | NA (FC); 289 (NGS) |  ~ 10 Mb (269) | PB + I | SAMN24505220 | Scaffold | BK068675* | X | X |
13 | Anthopleura xanthogrammica | NA (FC); 290 (NGS) |  ~ 14.8 Mb (133) | PB + Hi-C | SAMEA112465888 | Chromosome | NA | X | NA |
14 | Bunodosoma granuliferum | NA (FC); 352 (NGS) | 3.5 kb (278,782) | I | SAMN42720090 | Scaffold | BK069896* | X | X |
15 | Condylactis gigantea | NA (FC); 239 (NGS) |  ~ 199.5 kb (4,656) | PB + I | SAMEA9267623 | Chromosome | PRJNA1247437* | X | X |
16 | Entacmaea quadricolor | NA (FC); 428.3 (NGS) |  ~ 2.5 kb (249,586) | I | SAMN10992684 | Scaffold | NC_049066.1 | X | X |
17 | Urticina crassicornis | NA (FC); 302.1 (NGS) |  ~ 2.3 kb (188,453) | I | SAMN35990818 | Scaffold | BK068676* | X | X |
Family Actinodendridae | |||||||||
18 | Actinodendron alcyonoideum | NA (FC); 370 (NGS) |  ~ 7.5 kb (265,852) | I | SAMN42720097 | Scaffold | BK069891* | X | X |
19 | Actinodendron arboreum | NA (FC); 628 (NGS) | 1.5 kb (791,670) | I | SAMN42720085 | Scaffold | BK069893* | CVD | X |
Family Andvakiidae | |||||||||
20 | Telmatactis stephensoni | NA (FC); 485 (NGS) | NA | PB | SAMN27009947 | Contig | NA | X | NA |
Family Heteractidae | |||||||||
21 | Heteractis aurora | NA (FC); 248 (NGS) | 7 kb (122.508) | I | SAMN42720084 | Scaffold | BK069899* | X | X |
22 | Heteranthus verruculatus | NA (FC); 411 (NGS) | 1.5 kb (481,366) | I | SAMN42720087 | Scaffold | BK069900* | CVD | X |
23 | Radianthus crispa | NA (FC); ~ 275 (NGS) |  ~ 2.4 kb (166,207) | I | SAMN10992670 | Scaffold | BK068678* | X | X |
24 | Radianthus magnifica | NA (FC); ~ 279 (NGS) |  ~ 2.8 kb (147,986) | I | SAMN10992683 | Scaffold | BK068677* | X | X |
Family Phymanthidae | |||||||||
25 | Phymanthus crucifer | NA (FC); ~ 297 (NGS) |  ~ 2.2 kb (315,387) | I | SAMN10246555 | Scaffold | NC_027614.1 | X | X |
26 | Phymanthus loligo | NA (FC); 320 (NGS) | 2 kb (321,988) | I | SAMN42720083 | Scaffold | BK069901* | X | X |
Family Stichodactylidae | |||||||||
27 | Stichodactyla helianthus | NA (FC); ~ 297 (NGS) |  ~ 5.6 kb (209,545) | I | SAMN10992685 | Scaffold | BK068679* | X | X |
28 | Stichodactyla mertensii | NA (FC); ~ 295 (NGS) |  ~ 5.5 kb (209,211) | I | SAMN10992686 | Scaffold | BK068681* | X | X |
29 | Stichodactyla tapetum | NA (FC); 333 (NGS) | 1.7 kb (375,204) | I | SAMN42720089 | Scaffold | BK069903* | X | X |
30 | Thalassianthus aster (= Stichodactyla sp.) | NA (FC); 262 (NGS) | 8.7 kb (128,901) | I | SAMN42720088 | Scaffold | BK069902* | X | X |
Superfamily Actinostoloidea | |||||||||
Family Actinostolidae | |||||||||
31 | Actinostola sp. | NA (FC); 424 (NGS) |  ~ 383.1 kb (1,596) | PB | SAMN36377857 | Scaffold | NA | X | NA |
32 | Stomphia didemon | NA (FC); ~ 158 (NGS) |  ~ 3.6 kb (76,020) | I | SAMN34510624 | Scaffold | BK068680* | X | X |
Superfamily Metridioidea | |||||||||
Family Actinoscyphiidae | |||||||||
33 | Actinoscyphia sp. | NA (FC); 522 (NGS) | 58.4 Mb (131) | PB + I | SAMN26810372 | Scaffold | PRJNA1247437* | X | X |
Family Aiptasiidae | |||||||||
34 | Aiptasiogeton hyalinus | NA (FC); 249 (NGS) | 4 kb (211,325) | I | SAMN42720095 | Scaffold | BK069894* | X | X |
35 | Exaiptasia diaphana | NA (FC); ~ 256 (NGS) |  ~ 442 kb (4,312) | I | SAMN03839803 | Scaffold | NC_056771.1 | X | X |
Family Diadumenidae | |||||||||
36 | Diadumene cincta | NA (FC); 366 (NGS) | 1.9 kb (425,998) | I | SAMN42720099 | Scaffold | BK069897* | X | X |
37 | Diadumene leucolena | NA (FC); 360 (NGS) | 1.6 kb (409,582) | I | SAMN42720098 | Scaffold | BK069898* | X | X |
38 | Diadumene lineata | NA (FC); ~ 313 (NGS) |  ~ 17 Mb (137) | PB + I | SAMEA7536572 | Scaffold | NC_045515.1 | X | X |
Family Hormathiidae | |||||||||
39 | Paraphelliactis xishaensis | NA (FC); 543 (NGS) |  ~ 761 kb (3,886) | PB + I | Feng et al., 2021 | Scaffold | MT997141 | X | X |
Family Kadosactinidae | |||||||||
40 | Alvinactis idsseensis | NA (FC); 479 (NGS) | 27.6 Mb (38) | Hi-C + I + ONT | Zhou et al., 2023 | Chromosome | NA | X | NA |
Family Metridiidae | |||||||||
41 | Metridium farcimen | NA (FC); ~ 339 (NGS) |  ~ 2.5 kb (209,616) | I | SAMN35990982 | Scaffold | BK068682* | X | X |
42 | Metridium senile | NA (FC); ~ 390 (NGS) |  ~ 20 Mb (250) | PB + I | SAMEA110449715 | Chromosome | HG423143.1 | X | X |