Table 1 EDTA annotation of transposable elements in detail for Puccinia silphii, showing the proportion of each TE class found in the genome
From: The first chromosome-scale genome assembly of a microcyclic rust, Puccinia silphii
Order | Superfamily | Count | Masked bases | Percentage of masked sequences |
|---|---|---|---|---|
LTR | LTR_Copia | 374 | 246,438 | 0.19 |
LTR | LTR mdg-4/Ty3 | 1,879 | 2,200,916 | 4.58 |
LTR | LTR_unknown | 616 | 402,791 | 1.5 |
TIR | CACTA | 1,188 | 361,534 | 0.94 |
TIR | Mutator | 2,709 | 878,649 | 2.29 |
TIR | PIF_Harbinger | 1,914 | 679,472 | 1.77 |
TIR | Tc1_Mariner | 95 | 31,370 | 0.08 |
TIR | hAT | 1,480 | 448,816 | 1.17 |
nonLTR | LINE_element | 358 | 266,652 | 0.70 |
nonTIR | helitron | 542 | 433,343 | 1.13 |
repeat_region | repeat_region | 7,448 | 2,253,636 | 5.88 |
Total | Â | 18,603 | 8,203,317 | 21.42 |