Table 4 Description of significant SNPs identified by multi-locus method as associated with growth traits
Traits | SNP1 | Chr2 | Position | LOD score | r2(%)3 | Candidate Gene |
|---|---|---|---|---|---|---|
2-BW4 | 1:6396933 | 1 | 6,396,933 | 7.29 | 4.25 | AGPAT4 |
2-BW | 1:71445572 | 1 | 71,445,572 | 4.18 | 2.01 | LIN28B |
2-BW | 4:119264884 | 4 | 119,264,884 | 3.64 | 1.10 | SNX7 |
2-BW | 4:124914137 | 4 | 124,914,137 | 6.74 | 5.41 | TGFBR3 |
2-BW | 6:4331800 | 6 | 4,331,800 | 6.76 | 5.45 | KCNG4 |
2-BW | 7:19094139 | 7 | 19,094,139 | 6.10 | 5.22 | KIAA0319 |
2-BW | 11:70447343 | 11 | 70,447,343 | 3.90 | 1.26 | FGF14 |
2-BW | 13:103784734 | 13 | 103,784,734 | 8.14 | 4.70 | - |
2-BW | 14:136754144 | 14 | 136,754,144 | 3.83 | 2.43 | FAM196A |
2-BW | 15:132340482 | 15 | 132,340,482 | 7.42 | 6.18 | NPPC |
2-BW | 16:29188289 | 16 | 29,188,289 | 4.46 | 3.31 | FGF10 |
2-BW | 17:59259520 | 17 | 59,259,520 | 3.15 | 1.67 | CTSZ |
2-BL5 | 4:7396038 | 4 | 7,396,038 | 3.07 | 1.06 | ZFAT |
2-BL | 4:120486137 | 4 | 120,486,137 | 6.20 | 2.74 | PTBP2 |
2-BL | 4:121538115 | 4 | 121,538,115 | 6.29 | 2.39 | PTBP2 |
2-BL | 5:2278258 | 5 | 2,278,258 | 4.15 | 1.13 | TBC1D22A |
2-BL | 6:3535262 | 6 | 3,535,262 | 10.11 | 5.91 | IRF8 |
2-BL | 7:17568079 | 7 | 17,568,079 | 5.72 | 2.15 | PRL |
2-BL | 9:138483163 | 9 | 138,483,163 | 7.30 | 3.29 | - |
2-BL | 10:68503232 | 10 | 68,503,232 | 8.75 | 4.22 | WDR37 |
2-BL | 11:10434854 | 11 | 10,434,854 | 4.46 | 1.34 | RFC3 |
2-BL | 11:19433095 | 11 | 19,433,095 | 4.15 | 1.45 | MED4 |
2-BL | 11:46552378 | 11 | 46,552,378 | 7.72 | 2.79 | KLF12 |
2-BL | 12:54143906 | 12 | 54,143,906 | 7.20 | 2.88 | USP43 |
2-BL | 13:85852217 | 13 | 85,852,217 | 6.70 | 2.85 | - |
2-BL | 14:105024482 | 14 | 105,024,482 | 7.08 | 2.79 | SLC35G1 |
2-BL | 15:132873410 | 15 | 132,873,410 | 6.48 | 2.74 | NPPC |
2-BL | 18:31038583 | 18 | 31,038,583 | 3.51 | 1.16 | FOXP2 |
2-BL | 18:35051931 | 18 | 35,051,931 | 7.06 | 3.34 | IMMP2L |
2-BH6 | 1:250878677 | 1 | 250,878,677 | 6.81 | 2.67 | PTPN3 |
2-BH | 1:273386165 | 1 | 273,386,165 | 11.26 | 4.79 | VAV2 |
2-BH | 2:10667280 | 2 | 10,667,280 | 4.89 | 1.88 | DDB1 |
2-BH | 2:36547982 | 2 | 36,547,982 | 7.01 | 1.82 | GAS2 |
2-BH | 2:132847827 | 2 | 132,847,827 | 3.67 | 1.22 | CHSY3 |
2-BH | 5:2545703 | 5 | 2,545,703 | 5.08 | 2.25 | CERK |
2-BH | 5:99882722 | 5 | 99,882,722 | 4.26 | 1.79 | ACSS3 |
2-BH | 7:5179968 | 7 | 5,179,968 | 6.26 | 2.32 | BMP6 |
2-BH | 7:24919117 | 7 | 24,919,117 | 3.35 | 1.43 | BMP5 |
2-BH | 11:10434854 | 11 | 10,434,854 | 6.18 | 1.71 | RFC3 |
2-BH | 12:44345838 | 12 | 44,345,838 | 3.28 | 1.54 | FOXN1 |
2-BH | 13:25791420 | 13 | 25,791,420 | 7.23 | 3.53 | KLHL40 |
2-BH | 14:54246154 | 14 | 54,246,154 | 5.78 | 2.69 | ACTN2 |
2-BH | 14:96198734 | 14 | 96,198,734 | 7.78 | 4.18 | PCDH15 |
2-BH | 16:797534 | 16 | 797,534 | 7.28 | 4.40 | CTNND2 |
2-BH | 16:54503683 | 16 | 54,503,683 | 4.80 | 1.31 | SLIT3 |
2-BH | 17:811086 | 17 | 811,086 | 4.92 | 2.33 | PRAG1 |
2-BH | 17:42516390 | 17 | 42,516,390 | 4.44 | 1.99 | DHX35 |
4-BH7 | 1:19829505 | 1 | 19,829,505 | 3.27 | 1.73 | FBXO30 |
4-BH | 1:38953464 | 1 | 38,953,464 | 7.15 | 6.34 | TRDN |
4-BH | 2:9782979 | 2 | 9,782,979 | 6.38 | 6.14 | FADS3 |
4-BH | 2:72348683 | 2 | 72,348,683 | 4.29 | 3.15 | INSR |
4-BH | 4:122434064 | 4 | 122,434,064 | 4.49 | 7.02 | SLC44A3 |
4-BH | 7:15360062 | 7 | 15,360,062 | 6.96 | 6.86 | MBOAT1 |
4-BH | 9:136718449 | 9 | 136,718,449 | 4.52 | 6.49 | GRB10 |
4-BH | 12:45097165 | 12 | 45,097,165 | 6.70 | 5.65 | PHF12 |