Table 1 Genome assembly of 7 common blowfly species
Features | Chrysomya megacephala | Aldrichina grahami | Lucilia cuprina | Chrysomya rufifacies | Calliphora vicina | Lucilia sericata | Phormia regina |
|---|---|---|---|---|---|---|---|
Genome size (Mb) | 816.79 | 600.09 | 409.2 | 288.5 | 706.5 | 565.3 | 549.9 |
Number of contigs | 1,784 | 1,604 | 27,983 | 109,329 | 250 | 4,370 | 287,566 |
Number of scaffolds | 29 | 7 | 8,457 | 158,040 | 117 | / | 192,460 |
Contig N50 (Kb) | 1,602.2 | 1,930.0 | 65.3 | 3.2 | 35,300 | 296.1 | 5.6 |
Scaffold N50 (Mb) | 152.02 | 104.65 | 71.0 | 0.0042 | 131.7 | / | 0.0079 |
Scaffolds in chromosomes (%) | 99.9 | 96.4 | 96.0 | / | 98.35 | / | / |
Assembly level | 6 chromosomes | 7 chromosomes | 6 chromosomes | scaffold-level genome | 6 chromosomes | scaffold-level chromosome | scaffold-level genome |
BUSCO genes (%) | 97.71 | 99.2 | 97.1 | / | 99.6% | 96.8 | / |
Repeat (%) | 65.41 | 48.02 | 57.8 | / | / | / | / |
G + C (%) | 29.20 | 31 | 29.5 | 27 | 30 | 31 | 26.5 |
Genome coverage (X) | 39.44 | / | 212.0 | 28.0 | 50.0 | 73.0 | 44.0 |
Gene number | 16,589 | 12,823 | 15,856 | 14,554 | 15,683 | 17,047 | 8,312 |
Gene annotation | 16,054 | 12,791 | 13,927 | 12,160 | 13,778 | 14,704 | 7,792 |
BioSample ID | CNP0004364 | PRJNA513084 | SAMN23894005 | SAMN13254161 | SAMEA7521395 | SAMN13896454 | SAMN05567884 |
NCBI RefSeq | / | / | GCF_022045245.1 | GCA_014858695.1 | GCF_958450345.1 | GCF_015586225.1 | GCA_001735545.1 |
Sequencing technology | MGISEQ2000; PacBio Sequel II | PacBio Sequel I | Illumina, Chicago dovetails, PacBio | Illumina HiSeq | PacBio; Arima2 | PacBio Sequel | Illumina HiSeq; PacBio |
Data sources | Unpublished | [35] | [37] | [93] | Unpublished | [94] | [95] |