Table 1 The number of different types of resistance gene analog (RGA) candidates and subfamilies found on the reference genomes and pan-genome additional contigs
RGAs | Reference | Pangenome additional contigs | Pangenome |
|---|---|---|---|
CN | 13 (12, 1) | 36 (36, 0) | 49 (48, 1) |
CNL | 172 (99, 73) | 81 (81, 0) | 253 (180, 73) |
NBS | 7 (4, 3) | 40 (40, 0) | 47 (44, 3) |
NL | 99 (50, 49) | 49 (49, 0) | 148 (99, 49) |
RLK | 807 (128, 679) | 36 (35, 1) | 843 (163, 680) |
RLP | 132 (60, 72) | 51 (51, 0) | 183 (111, 72) |
TMCC | 159 (16, 143) | 28 (28, 0) | 187 (44, 143) |
TN | 15 (8, 7) | 6 (6, 0) | 21 (14, 7) |
TNL | 73 (30, 43) | 6 (6, 0) | 79 (36, 43) |
TX | 31 (21, 10) | 40 (40, 0) | 71 (61, 10) |
OTHER | 21 (6, 15) | 0 (0, 0) | 21 (6, 15) |
Total | 1529 (434,1095) | 373 (372,1) | 1902 (806,1096) |