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Table 4 SNPs significantly associated with HKW identified across three environments

From: Genetic dissection of hundred-kernel weight through combined genome-wide association study and linkage analysis in tropical maize

Env

Chr

SNP

ref

alt

-log10(P)

Additive Effect

Dominance Effect

19DH

2

73,091,888

G

A

5.52

−3.84

0.22

2

176,207,154

G

A

4.61

-

-

4

233,438,083

C

T

4.92

−0.5

0.82

5

51,610,984

T

G

5.13

1.2

0.53

9

36,178,213

G

A

5.56

0.9

0.68

19BS

1

25,750,352

T

A

4.7

0.8

−0.59

1

25,750,317

C

T

4.54

−1.7

−0.77

2

73,091,888

G

A

5.17

−3.44

1.42

4

182,679,880

T

C

4.82

1.37

0.49

4

233,438,083

C

T

4.93

−0.18

0.76

4

182,680,064

A

G

4.55

−1.14

0.47

BLUP

1

25,750,352

T

A

4.5

0.81

0.2

2

73,091,888

G

A

5.58

−2.97

0.65

2

176,207,154

G

A

4.6

-

-

4

182,679,880

T

C

4.56

0.65

0.57

4

228,845,293

C

T

4.51

−0.51

0.5

4

233,438,083

C

T

5.19

−0.25

0.95

5

51,610,984

T

G

4.59

1.1

0.72

6

165,885,324

A

T

4.74

0.92

0.09

8

101,736,982

T

A

4.54

−1.06

0.38

9

36,178,213

G

A

5.46

0.76

0.68