Population structure and mitogenomic analyses reveal dispersal routes of Macrobrachium nipponense in China

Luo, Penghui; Jin, Yiting; Zhao, Ting; Bian, Chao; Lv, Zhimin; Zhou, Na; Qin, Jianguang; Sun, Shengming

doi:10.1186/s12864-025-11692-w

BMC Genomics

Table 3 Characteristics of M.nipponense mitogenomes in 5 populations. X, Khanka Lake; H, Haihe River; P, Poyang Lake; T, Taihu Lake; F, Fuxian Lake

From: Population structure and mitogenomic analyses reveal dispersal routes of Macrobrachium nipponense in China

Gene	Direction	Size(bp)					Start codon					Stop codon					Intergenic regions
Gene	Direction	X	H	P	T	F	X	H	P	T	F	X	H	P	T	F	X	H	P	T	F
cox1	+	1535	1535	1535	1535	1535	ACG	ACG	ACG	ACG	ACG	TA-	TA-	TA-	TA-	TA-	1	0	1	0	1
trnL2(taa)	+	64	64	64	64	64											0	0	0	0	0
cox2	+	685	685	685	685	685	ATG	ATG	ATG	ATG	ATG	T–	T–	T–	T–	T–	2	2	2	2	2
trnK(ttt)	+	68	68	68	68	68											0	0	0	0	0
trnD(gtc)	+	65	66	66	66	65											0	0	0	0	0
atp8	+	159	159	159	159	159	ATC	ATC	ATC	ATC ATC C	ATC ATC C	TAA	TAA	TAA	TAA	TAA	0	0	0	0	0
atp6	+	675	675	675	675	675	ATG	ATG	ATG	ATG	ATG	TAA	TAA	TAA	TAA	TAA	−7	−7	−7	−7	−7
cox3	+	789	789	789	789	789	ATG	ATG	ATG	ATG	ATG	TAA	TAA	TAA	TAA	TAA	−1	−1	−1	−1	−1
trnG(tcc)	+	65	65	65	65	65											6	6	6	6	6
nad3	+	354	354	354	354	354	ATG	ATG	ATG	ATG	ATG	TAA	TAA	TAA	TAA	TAA	0	0	0	0	0
trnA(tgc)	+	63	63	63	63	63											2	2	2	2	2
trnR(tcg)	+	63	63	63	63	63											−1	−1	−1	−1	−1
trnN(gtt)	+	65	65	65	65	65											6	6	6	6	6
trnS1(tct)	+	67	67	67	67	67											0	0	0	0	0
trnE(ttc)	+	69	69	69	69	69											0	0	0	0	0
trnF(gaa)	-	67	67	67	67	67											−2	−2	−2	−2	−2
nad5	-	1707	1707	1707	1707	1707	ATG	ATG	ATG	ATG	ATG	TAA	TAA	TAA	TAA	TAA	0	0	0	0	0
trnH(gtg)	-	64	64	64	64	64											18	18	18	18	18
nad4	-	1335	1335	1335	1335	1335	ATG	ATG	ATG	ATG	ATG	TAG	TAG	TAG	TAG	TAG	2	2	2	2	2
nad4 l	-	300	300	300	300	300	ATG	ATG	ATG	ATG	ATG	TAA	TAA	TAA	TAA	TAA	−7	−7	−7	−7	−7
trnT(tgt)	+	65	65	65	65	65											2	2	2	2	2
trnP(tgg)	-	65	65	65	65	65											−1	−1	−1	−1	−1
nad6	+	516	516	516	516	516	ATC	ATC	ATC	ATC	ATC	TAA	TAA	TAA	TAA	TAA	1	1	1	1	1
cob	+	1135	1135	1135	1135	1135	ATG	ATG	ATG	ATG	ATG	T–	T–	T–	T–	T–	−1	−1	−1	−1	−1
trnS2(tga)	+	69	69	69	69	69											0	0	0	0	0
nad1	-	942	942	942	942	942	ATG	ATG	ATG	ATG	ATG	TAG	TAG	TAG	TAG	TAG	19	19	19	19	19
trnL1(tag)	-	65	65	65	65	65											23	23	23	23	23
rrnL	-	1282	1282	1282	1282	1282											0	0	0	0	0
trnV(tac)	-	66	66	66	66	66											21	21	21	21	21
rrnS	-	852	852	852	852	853											4	4	4	4	4
D-loop	+	949	950	950	950	946											0	0	0	0	−3
trnI(gat)	+	67	67	67	67	67											0	0	0	0	0
trnQ(ttg)	-	68	68	68	68	68											31	29	29	29	27
trnM(cat)	+	68	68	68	68	68											8	8	8	8	8
nad2	+	996	996	996	996	996	ATT	ATT	ATT	ATT	ATT	TAA	TAA	TAA	TAA	TAA	0	0	0	0	0
trnW(tca)	+	69	69	69	69	69											−2	−2	−2	−2	−2
trnC(gca)	-	62	62	62	62	62											1	1	1	1	1
trnY(gta)	-	63	64	64	64	63											0	0	0	0	0

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ISSN: 1471-2164

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