Fig. 2

Phylogenetic tree of clustered assembled contigs. The TryCycler clustered assemblies based on the MASH distances between contigs displayed in a phylogenetic tree. Almost all assemblies fall within the cluster 1 branching structure. The 16 assemblies used for reconciling and MSA steps are labeled (e.g., blue squares are Flye assemblies, pink circles are Minipolish assemblies, orange triangles are Raven assemblies, and green diamonds are Canu assemblies)