Table 1 Comparison between the assembled and published E. tenella reference genomes
From: Chromosome-level genome assembly of Eimeria tenella at the single-oocyst level
Statistic | E. tenella (This study) | E. tenella (Published in 2023) | E. tenella (Published in 2021) | E. tenella (Published in 2013) |
|---|---|---|---|---|
Number of oocysts | One | Population | Population | Population |
Sequencing platform | PB + ONT + MGI | ONT + Illumina | PB + Hic + 10X Genomics Illumina | Illumina |
Genome assembly | ||||
Number of scaffolds | 15 | 15 | 33 | 4,664 |
Genome size (bp) | 51,908,535 | 51,306,473 | 53,250,139 | 51,859,670 |
Largest contig (bp) | 6,727,460 | 6,756,684 | 6,779,867 | 1,462,819 |
N50 (bp) | 3,921,268 | 3,922,363 | 4,007,228 | 200,914 |
N90 (bp) | 1,828,249 | 1,771,817 | 1,948,711 | 3,069 |
GC (%) | 51.61 | 51.5 | 51.5 | 51.5 |
Size of total repeat sequences (%) | 47.17 | - | - | 38.94 |
Genome annotation | ||||
Number of predicted genes | 6,095 | - | 7,268 | 8,603 |
Number of annotated genes | 5,484 | - | - | - |
Genome completeness | ||||
Complete BUSCOs (%) | 92.0 | 98.8 | 98.8 | 93.0 |
Complete and single-copy BUSCOs (%) | 91.4 | 98.8 | 98.4 | 92.8 |
Complete and duplicated BUSCOs (%) | 0.6 | 0 | 0.4 | 0.2 |
Fragmented BUSCOs (%) | 0.1 | 0.8 | 0.4 | 5.2 |
Missing BUSCOs (%) | 0.7 | 0.4 | 0.8 | 1.8 |
Total Lineage BUSCOs | 502 | 502 | 502 | 502 |