Table 2 Assembly statistics and BUSCO scores for existing H. longicornis genome assemblies and predicted proteomes; the arthropoda_odb10 ortholog dataset was used for BUSCO analyses (n = 1,013 orthologs). The highest contiguity level for each assembly ([S]caffold / [C]ontig) is reported
Reference | NCBI Assembly ID | (S)caffolds / (C)ontigs | Sequencing Technology | Assembly size | Gene Count | Complete | Duplicate | Fragmented | Missing |
|---|---|---|---|---|---|---|---|---|---|
Jia et al. 2020 (G) | BIME_HaeL_1.3 | 3,885 (S) + 11 chromosomes | PacBio Sequel + Illumina + Illumina Hi-C | 2.6 Gbp | N/A | 87.50% | 2.40% | 6.10% | 6.40% |
Jia et al. 2020 (P) | BIME_HaeL_1.3 | N/A | N/A | 22.71 Mbp | 25,651 | 53.60% | 2.00% | 12.90% | 33.50% |
Guerrero et al. 2019 (G) | HLAgriLifeRun1 | 34,208 (C) | PacBio Sequel + Illumina | 7.36 Gbp | N/A | 95.10% | 84.20% | 3.50% | 1.50% |
Yu et al. 2022 (G) | ASM2241470v1 | 6,516 (S) | PacBio Sequel + Illumina | 3.16 Gbp | N/A | 90.20% | 20.00% | 4.80% | 4.90% |
Umemiya-Shirafuji et al. 2023 (G) | ASM2984928v1 | 99,353 (C) | Nanopore + Illumina | 2.48 Gbp | N/A | 78.50% | 2.50% | 13.20% | 8.30% |
This study (G) | GCA_048455015.1 | 270 (S) | PacBio Sequel II + Illumina Hi-C | 3.1 Gbp | N/A | 94.40% | 5.70% | 3.40% | 2.30% |
This study (P) | GCA_048455015.1 | N/A | N/A | 25.85 Mbp | 21,947 | 95.00% | 5.70% | 1.20% | 3.80% |