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  1. Orobanche is a parasitic plant distributed in the temperate zone of Northern Hemisphere, with approximately 200 species found worldwide. In the Republic of Korea, two species of Orobanche, namely O. coerulescens ...

    Authors: Sang-Chul Kim, Eun Su Kang, Tae-Hee Kim, Ye-Rim Choi and Hyuk-Jin Kim
    Citation: BMC Genomics 2025 26:157
    Content type: Research Published on:

  2. Poplars are important woody plants, which are widely distributed in the forests from the subtropics to the north of the Northern Hemisphere. Poplars have high ecological and economic value. However, there are ...

    Authors: Yujie Shi, Jingliang Huang, Xueqin Wan, Jinglian Shi, Zhen Chen and Wei Zeng
    Citation: BMC Genomics 2025 26:156
    Content type: Research Published on:

  3. The innovations of the “Omics Era” have ushered in significant advancements in genetic improvement of agriculturally important animal species through transforming genetics, genomics and breeding strategies. Th...

    Authors: Linnea K. Andersen, Neil F. Thompson, Jason W. Abernathy, Ridwan O. Ahmed, Ali Ali, Rafet Al-Tobasei, Benjamin H. Beck, Bernarda Calla, Thomas A. Delomas, Rex A. Dunham, Christine G. Elsik, S. Adam Fuller, Julio C. García, Mackenzie R. Gavery, Christopher M. Hollenbeck, Kevin M. Johnson…
    Citation: BMC Genomics 2025 26:155
    Content type: Review Published on:

    The Correction to this article has been published in BMC Genomics 2025 26:260

  4. Inbreeding, a central theme in evolutionary and conservation biology, is a crucial practice in breeding to stabilize and enhance the specific traits or to establish inbred lines. It also carries the risk of in...

    Authors: Hong-Man Chen, Heng Zhao, Qun-Yao Zhu, Chen Yan, Ya-Qi Liu, Si Si, Muhammad Ameen Jamal, Kai-Xiang Xu, De-Ling Jiao, Min-Juan Lv, Wen Wang, Hong-Ye Zhao, Lei Chen, Ming-Shan Wang and Hong-Jiang Wei
    Citation: BMC Genomics 2025 26:154
    Content type: Research Published on:

  5. Reactive oxygen species (ROS) serve as signal molecules in plant defense responses, and the respiratory burst oxidase homolog (RBOH) enzyme plays a crucial role in their production. Although numerous RBOH fami...

    Authors: Zhiqiang Song, Chao Chen, Hua Duan, Ting Yu, Yaqian Zhang, Yuneng Wei, Decong Xu and Dong Liu
    Citation: BMC Genomics 2025 26:153
    Content type: Research Published on:

  6. Foxtail millet (Setaria italica) is one of the most ancient cultivated cereal crops and is ideal for the functional genomics of the Panicoideae crops. In the present study, we generated an F2 population consistin...

    Authors: Lulu Gao, Qianxue Zhu, Huan Li, Shiyuan Wang, Jiahui Fan, Tianguo Wang, Lejie Yang, Yuqin Zhao, Yixuan Ma, Lu Chen, Xiaorui Li, Shuqi Dong, Xiaoqian Chu, Xianmin Diao, Xiangyang Yuan, Jiagang Wang…
    Citation: BMC Genomics 2025 26:152
    Content type: Research Published on:

  7. Temperature is one of the essential abiotic factors required for honey bee survival and pollination. Apart from its role as a major contributor to colony collapse disorder (CCD), it also affects honey bee phys...

    Authors: Abdulkadir Yusif Maigoro, Jeong Hyeon Lee, Yumi Yun, Sujin Lee and Hyung Wook Kwon
    Citation: BMC Genomics 2025 26:151
    Content type: Research Published on:

  8. Primary cardiomyopathies are major causes of heart failure, placing a substantial burden on both individuals and society. Revealing its genetic profiles can lead to a better understanding of the mechanism and ...

    Authors: Rui-lin Liu, Yi-feng Yang, Ke Gong, Lei Wang, Yao Yao and Li Xie
    Citation: BMC Genomics 2025 26:150
    Content type: Research Published on:

  9. Staphylococcus aureus is an important pathogen that can colonize humans and various animals. However, the host-associated determinants of S. aureus remain uncertain, which leads to difficulties in inferring its h...

    Authors: Wenyin Du, Sitong Chen, Rong Jiang, Huiliu Zhou, Yuehe Li, Dejia Ouyang, Yajie Gong, Zhenjiang Yao and Xiaohua Ye
    Citation: BMC Genomics 2025 26:149
    Content type: Research Published on:

  10. Circular RNAs (circRNAs) are stable, covalently closed non-coding RNAs formed by reverse splicing of precursor mRNA. They play critical roles in various biological processes, including insulin secretion and me...

    Authors: Binghao Shao, Ziyang Wang, Pengna Luo, Pengfei Du, Xiangli Zhang, Huaiyong Zhang, Xuemeng Si, Sen Ma, Wen Chen and Yanqun Huang
    Citation: BMC Genomics 2025 26:148
    Content type: Research Published on:

  11. Ulcerative colitis (UC) is an immune-mediated chronic intestinal disease, with a pathogenesis that remains incompletely understood. The purpose of this study is to analyze the difference of gene expression bet...

    Authors: Zhe Zhang, Dan Li, Shihang Zheng, Changqing Zheng, Hao Xu and Xueqing Wang
    Citation: BMC Genomics 2025 26:147
    Content type: Research Published on:

  12. Understanding the genetic basis of resilience in marine organisms is critical for conservation and management, particularly in the face of escalating environmental stress and disease outbreaks. The bay scallop Ar...

    Authors: Denis Grouzdev, Emmanuelle Pales Espinosa, Stephen Tettelbach, Arnaud Tanguy, Isabelle Boutet, Harrison Tobi and Bassem Allam
    Citation: BMC Genomics 2025 26:146
    Content type: Research Published on:

  13. Progesterone (P4) is an endogenous sex steroid hormone involved in the ovulatory cycle and pregnancy of animal species. In sheep and goats, P4 analogues are used to induce synchronized ovulations and oestrus b...

    Authors: Anthony Bernard, Elisabeth Dirlewanger, Marine Delmas, Delphine Racofier, Marie-Laure Greil, Anne-Lyse Lainé, Chantal Porte, Dominique Gennetay, Matthieu Keller and Philippe Chemineau
    Citation: BMC Genomics 2025 26:145
    Content type: Research Published on:

  14. tRNA fragments (tRFs) are small non-coding RNAs generated from cleaved tRNA molecules, playing key roles in gene regulation and cellular processes. Produced by ribonucleases like angiogenin and Dicer, tRFs var...

    Authors: Lina Ma, Fengru Zhao, Zhengwei Zhao, Letian Zhang, Jiajie Yao, Qing Ma, Xuemei Deng, Jiankui Wang, Yaling Gu, Juan Zhang and Hesham Y. A. Darwish
    Citation: BMC Genomics 2025 26:144
    Content type: Research Published on:

  15. The basic helix-loop-helix (bHLH) transcription factors play important physiological functions in the processes of plant growth, development, and response to abiotic stresses. However, a comprehensive genome-s...

    Authors: Deqi Liu, Pang Zhang, Tingting Zhou, Yanbi Wu, Mengping Yuan, Xuemei Zhang and Yiqing Liu
    Citation: BMC Genomics 2025 26:143
    Content type: Research Published on:

  16. Authors: Nicolas Fragoso-Bargas, Nancy S. Mcbride, Sindre Lee-Ødegård, Deborah A. Lawlor, Paul D. Yousefi, Gunn-Helen Moen, Julia O. Opsahl, Anne Karen Jenum, Paul W. Franks, Rashmi B. Prasad, Elisabeth Qvigstad, Kåre I. Birkeland, Kåre R. Richardsen and Christine Sommer
    Citation: BMC Genomics 2025 26:142
    Content type: Correction Published on:

    The original article was published in BMC Genomics 2025 26:62

  17. Eimeria tenella (E. tenella) infection is a major cause of coccidiosis in chickens, leading to significant economic losses in the poultry industry due to its impact on the cecum. This study presents a comprehensi...

    Authors: Jun-Hao Tu, Bo-Gong Liu, Bing-Jin Lin, Hui-Chao Liu, Song-Chang Guo, Qing-Yuan Ouyang, Ling-Zhao Fang, Xi He, Ze-He Song and Hai-Han Zhang
    Citation: BMC Genomics 2025 26:141
    Content type: Research Published on:

  18. The cytochrome P450 family 2 subfamily C member 9 (CYP2C9) exhibits extensive genetic variability that may influence the metabolism of approximately 16–20% of all drugs. Understanding the frequency and functional...

    Authors: Weam Aldiban, Majd N. Aljamali and Lama A. Youssef
    Citation: BMC Genomics 2025 26:140
    Content type: Research Published on:

  19. Interspecific hybrid combinations of Larimichthys crocea × Larimichthys polyactis exhibit heterosis in terms of growth traits; however, the molecular regulatory mechanism underlying this phenomenon remains unclea...

    Authors: Dan-Dan Guo, Feng Liu, Qing-Ping Xie, Ting Ye, Fu-Liang Wei, Bao-Long Niu and Bao Lou
    Citation: BMC Genomics 2025 26:139
    Content type: Research Published on:

  20. Ensuring sufficient gRNA transcript levels is critical for obtaining optimal CRISPR-Cas9 gene editing efficiency. The standard gRNA scaffold contains a sequence of four thymine nucleotides (4T), which is known...

    Authors: Yu C. J. Chey, Luke Gierus, Caleb Lushington, Jayshen C. Arudkumar, Ashleigh B. Geiger, Lachlan G. Staker, Louise J. Robertson, Chandran Pfitzner, Jesse G. Kennedy, Ryan H. B. Lee, Gelshan I. Godahewa, Fatwa Adikusuma and Paul Q. Thomas
    Citation: BMC Genomics 2025 26:138
    Content type: Research Published on:

  21. The genus Cuscuta L. (Convolvulaceae), commonly known as dodder, is a holoparasite plant that relies on host plants for nutrition, leading to significant genomic changes, particularly in plastomes. This dependenc...

    Authors: Sivagami-Jean Claude, Kashish Kamra, Joonhyung Jung, Hye One Kim and Joo-Hwan Kim
    Citation: BMC Genomics 2025 26:137
    Content type: Research Published on:

  22. The sequencing of non-model species has increased exponentially in recent years, largely due to the advent of novel sequencing technologies. In this study, we construct the Reference Genome of the Spanish toot...

    Authors: Alfonso López-Solano, Ignacio Doadrio, Tessa Lynn Nester and Silvia Perea
    Citation: BMC Genomics 2025 26:136
    Content type: Research Published on:

  23. Rubber tree (Hevea brasiliensis Muell. Arg.) is a significant commercial crop in tropical areas worldwide, with rubber production threatened by Tapping Panel Dryness (TPD). Rubber tree virus 1 (Capillovirus unihe...

    Authors: Hao Wang, Ruibai Zhao, Xi Huang, Hongxing Wang and Xianmei Cao
    Citation: BMC Genomics 2025 26:135
    Content type: Research Published on:

  24. The red claw crayfish (Cherax quadricarinatus) is a commercially and ecologically significant species that displays a unique intersex model with an ovotestis gonad and was identified to have functional testes and...

    Authors: Honglin Chen, Miaofeng Ouyang, Huan Zhou, Fangfang Liu, Huiyi Cai and Bao Lou
    Citation: BMC Genomics 2025 26:134
    Content type: Research Published on:

  25. This cross-sectional study investigated the relationship between genetic variations in monocarboxylate transporter genes and blood lactate production and removal after high-intensity efforts in humans. The stu...

    Authors: Ewelina Maculewicz, Andrzej Mastalerz, Aleksandra Garbacz, Anna Mróz, Petr Stastny, Miroslav Petr, Dominik Kolinger, Pavlina Vostatková and Aleksandra Bojarczuk
    Citation: BMC Genomics 2025 26:133
    Content type: Research Published on:

  27. Soybean (Glycine max (L.) Merr.) is a crucial crop due to its high plant protein and oil content. Previous studies have shown that soybeans exhibit significant heterosis in terms of yield and protein content Howe...

    Authors: Yuhua Yang, Suqin He, Lihong Xu, Minggui Wang, Shuichun Chen, Zhiyuan Bai, Tingting Yang, Bo Zhao, Lixiang Wang, Haiping Zhang, Jiangjiang Zhang and Ruijun Zhang
    Citation: BMC Genomics 2025 26:131
    Content type: Research Published on:

  29. There is an emerging body of evidence that current poultry feed is formulated in excess for phosphorus (P), which results in unnecessarily high P excretions. Sustainable concepts for agricultural P flows shoul...

    Authors: Hiba Qasir, Henry Reyer, Michael Oster, Siriluck Ponsuksili, Nares Trakooljul, Vera Sommerfeld, Markus Rodehutscord and Klaus Wimmers
    Citation: BMC Genomics 2025 26:129
    Content type: Research Published on:

  30. The accumulation of cadmium (Cd) in ryegrass (Lolium multiflorum Lamk.) as a widely used pasture plant poses a serious risk to food safety. This study aimed to investigate the differences in phenotypes, physiolog...

    Authors: Xunzhe Yang, Xia Wang, Xuan Zhang, Dandan Wu, Yiran Cheng, Yi Wang, Lina Sha, Jian Zeng, Houyang Kang, Xing Fan, Linkai Huang, Yinglong Chen, Yonghong Zhou and Haiqin Zhang
    Citation: BMC Genomics 2025 26:128
    Content type: Research Published on:

  31. Pulmonary hypertension (PH) is a devastating disease marked by elevated pulmonary artery pressure, resulting in right ventricular (RV) failure and mortality. Despite the identification of several dysregulated ...

    Authors: Gaohui Fu, Lin Qiu, Jun Wang, Shujin Li, Jinglin Tian, Jiayu Wu, Xinyang Lin, Yiheng Zhu, Zixin Liu, Lingjie Luo, Ku Wang, Feilong Zhao, Jiahao Kuang, Shuangqing Liang, Shiran Liang, Yuqing Guo…
    Citation: BMC Genomics 2025 26:127
    Content type: Research Published on:

  32. Nanopore adaptive sampling (NAS) offers a promising approach for assessing genetic diversity in targeted genomic regions. Here we designed and validated an experiment to enrich a set of resistance genes in sev...

    Authors: Javier Belinchon-Moreno, Aurélie Berard, Aurélie Canaguier, Véronique Chovelon, Corinne Cruaud, Stéfan Engelen, Rafael Feriche-Linares, Isabelle Le-Clainche, William Marande, Vincent Rittener-Ruff, Jacques Lagnel, Damien Hinsinger, Nathalie Boissot and Patricia Faivre-Rampant
    Citation: BMC Genomics 2025 26:126
    Content type: Research Published on:

  33. In plants, FK506-binding proteins (FKBPs) have been shown to participate in various biological processes such as photosynthetic system reaction, stress response, and growth and development. However, the roles of

    Authors: Jianguang Liu, Zhao Geng, Guiyuan Zhao, Mengzhe Li, Zetong An, Hanshuang Zhang and Yongqiang Wang
    Citation: BMC Genomics 2025 26:125
    Content type: Research Published on:

  35. High-altitude environments are inhospitable, but Triplophysa, the largest taxon among the three major fish groups in the Qinghai-Tibetan Plateau (QTP), is an exception. However, the evolutionary profiling of the ...

    Authors: Qingyuan Zhao, Fei Xie, Qiuyue He, Lulu Wang, Kenan Guo, Cong Zhang and Yong Wang
    Citation: BMC Genomics 2025 26:123
    Content type: Research Published on:

  36. Epidermal growth factor receptor inhibitors (EGFRIs) are used to treat certain cancers but frequently cause cutaneous inflammation that can hinder treatment. This is due in part to the effects of EGFRIs on pro...

    Authors: David C. Gibbs, Myles R. McCrary, Carlos S. Moreno, Lindsey Seldin, Chaoran Li, Nourine A. H. Kamili and Brian P. Pollack
    Citation: BMC Genomics 2025 26:122
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2025 26:291

  38. Mangoes (Mangifera indica L.) are a widely grown fruit tree crop across the world, but breeding new varieties can take 15-20 years due to its long juvenile period and high heterozygosity. Marker-assisted selectio...

    Authors: Shamseldeen Eltaher, Jin Li, Barbie Freeman, Sukhwinder Singh and Gul Shad Ali
    Citation: BMC Genomics 2025 26:120
    Content type: Research Published on:

  39. GC16 is a novel pesticide with acaricidal properties against the spider mite Tetranychus pueraricola (Ehara & Gotoh). Its physiological mechanisms have been described previously, but its molecular mechanisms of a...

    Authors: Yanyan He, Guangzu Du, Guang Wang, Huiming Guan, Shusheng Zhu, Bin Chen, Xiahong He and Youyong Zhu
    Citation: BMC Genomics 2025 26:119
    Content type: Research Published on:

  40. Systematic genomics-guided population-based studies on the neglected malaria parasites, P. malariae, P. ovale curtisi, and P. ovale wallikeri species remain challenging due to their low parasitemia, underestimati...

    Authors: Fathia Ben-Rached, Amit Kumar Subudhi, Chang Li, Mariah Alawi, Rohit Satyam, Sui Xu, Guoding Zhu, Raeece Naeem, Sara Mfarrej, Di Liu, Zenaida Stead, Caroline Askonas, Yaobao Liu, Jun Cao and Arnab Pain
    Citation: BMC Genomics 2025 26:118
    Content type: Research Published on:

  41. Quantitative Real-time PCR (qRT-PCR) is a powerful technique to analyze gene expression patterns by measuring the relative abundance of mRNA transcription levels. The most crucial step in obtaining accurate re...

    Authors: Ping Han, Jianming Chen, Zhennan Sun, Shengjie Ren and Xubo Wang
    Citation: BMC Genomics 2025 26:117
    Content type: Research Published on:

  42. Molecular genetic approaches have become vital to understanding the evolutionary processes that act on insect pest populations. From mapping the development of resistance to monitoring and predicting pest move...

    Authors: Ashley E. Tessnow, Rodney N. Nagoshi, Robert L. Meagher, Todd M. Gilligan, Ben M. Sadd, Yves Carrière, Holly N. Davis, Shelby J. Fleischer, Kelly Richers, John C. Palumbo, Patrick Porter, Jose Carlos Verle Rodrigues and Gregory A. Sword
    Citation: BMC Genomics 2025 26:116
    Content type: Research Published on:

  43. Olfactory receptor (OR) genes are highly polymorphic and form extensive families that recognize a wide range of vertebrate odorants. To explore the genetic diversity of MHC-linked OR genes and their connection...

    Authors: Mingue Kang, Byeongyong Ahn, Jae Yeol Shin, Hye-Sun Cho, Jongan Lee and Chankyu Park
    Citation: BMC Genomics 2025 26:115
    Content type: Research Published on:

  44. Black wool can effectively prevent sheep from DNA damage as well as fungal infection, and can improve reproductive performance. In order to explore the candidate genes related to black wool formation in Qira s...

    Authors: Wen Zhou, Xiaopeng Li, Xuechen Zhang, Lijun Zhu, Yuwei Peng, Cheng-long Zhang, Zhipeng Han, Ruizhi Yang, Xinyu Bai, Quanfeng Wang, Yuejun Zhao and Shudong Liu
    Citation: BMC Genomics 2025 26:114
    Content type: Research Published on:

  45. Split-hand/foot malformation (SHFM) is a congenital disability characterized by the absence or hypoplasia of the central ray of the hands and/or feet. This study reports a causative variant in the TP63 gene in a ...

    Authors: Jianlong Zhuang, Yanqing Li, Yu’e Chen, Hegan Zhang, Shufen Liu, Manman Hu and Chunnuan Chen
    Citation: BMC Genomics 2025 26:113
    Content type: Research Published on:

  46. The genetic diversity of a population defines its ability to adapt to episodic and fluctuating environmental changes. For species of agricultural value, available genetic diversity also determines their breedi...

    Authors: Bernarda Calla, Jingwei Song and Neil Thompson
    Citation: BMC Genomics 2025 26:112
    Content type: Research Published on:

  47. Diversifying animal cultivation demands efficient genotyping for enabling genomic selection, but non-model species lack efficient genotyping solutions. The aim of this study was to optimize a genotyping-by-seq...

    Authors: Daniel Fischer, Miika Tapio, Oliver Bitz, Terhi Iso-Touru, Antti Kause and Ilma Tapio
    Citation: BMC Genomics 2025 26:111
    Content type: Research Published on:

  48. Small proteins with fewer than 100, particularly fewer than 50, amino acids are still largely unexplored. Nonetheless, they represent an essential part of bacteria’s often neglected genetic repertoire. In rece...

    Authors: Julian M. Hahnfeld, Oliver Schwengers, Lukas Jelonek, Sonja Diedrich, Franz Cemič and Alexander Goesmann
    Citation: BMC Genomics 2025 26:110
    Content type: Research Published on:

  49. Chickpea (Cicer arietinum L.) ranks as the third most crucial grain legume worldwide. Fusarium wilt (Fusarium oxysporum f. sp. ciceri (Foc)) is a devastating fungal disease that prevents the maximum potential for...

    Authors: Aliakbar Faramarzpour, Sara Dezhsetan, Hamid Hassaneian Khoshro, Raheleh Mirdar Mansuri, Hamid Reza Pouralibaba and Zahra-Sadat Shobbar
    Citation: BMC Genomics 2025 26:106
    Content type: Research Published on:

  50. Drug-target binding affinity (DTA) prediction is vital in drug discovery and repositioning, more and more researchers are beginning to focus on this. Many effective methods have been proposed. However, some cu...

    Authors: Junwei Luo, Ziguang Zhu, Zhenhan Xu, Chuanle Xiao, Jingjing Wei and Jiquan Shen
    Citation: BMC Genomics 2025 26:105
    Content type: Research Published on:

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BMC Genomics

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